View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0214_high_37 (Length: 429)

Name: NF0214_high_37
Description: NF0214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0214_high_37
NF0214_high_37
[»] chr2 (3 HSPs)
chr2 (101-401)||(33686235-33686535)
chr2 (101-401)||(33703289-33703589)
chr2 (154-397)||(33678839-33679077)


Alignment Details
Target: chr2 (Bit Score: 250; Significance: 1e-139; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 101 - 401
Target Start/End: Original strand, 33686235 - 33686535
Alignment:
Q  101 atgaaggaaggaaaaataaaccacgaagagtccatatatgatgttgttgtttttgtcgttcaaaaaatcaacttcatgtataaatattcacgtttattgt 200  Q
    |||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |||||||||    
T  33686235 atgaagcaaggaaaaataaaccacgaagagtccatatatgatgttgctgtttttgtcgttcaaaaaatcaactacatgtataaatattcatgtttattgt 33686334  T
Q  201 tcacatatactaagaatacaacgtgtttgaaaagttatagtgattactactcgagatgagtatagtccctagagggagtcaagtttagttttcatatata 300  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33686335 tcacatatactaagaatacaacgtgtttgaaaagttatagttattactactcgagatgagtatagtccctagagggagtcaagtttagttttcatatata 33686434  T
Q  301 gttgtcaaaatcaacaaaatcgttaagannnnnnnnngaatttcaatattttttccaacctttcataccattcaaattcacttgatcgccaaggtaatac 400  Q
    |||||||||||||||| |||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33686435 gttgtcaaaatcaacagaatcgttaagaattttttttgaatttcaatattttttccaacctttcataccattcaaattcacttgatcgccaaggtaatac 33686534  T
Q  401 t 401  Q
    |    
T  33686535 t 33686535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 101 - 401
Target Start/End: Original strand, 33703289 - 33703589
Alignment:
Q  101 atgaaggaaggaaaaataaaccacgaagagtccatatatgatgttgttgtttttgtcgttcaaaaaatcaacttcatgtataaatattcacgtttattgt 200  Q
    |||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |||||||||    
T  33703289 atgaagcaaggaaaaataaaccacgaagagtccatatatgatgttgctgtttttgtcgttcaaaaaatcaactacatgtataaatattcatgtttattgt 33703388  T
Q  201 tcacatatactaagaatacaacgtgtttgaaaagttatagtgattactactcgagatgagtatagtccctagagggagtcaagtttagttttcatatata 300  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33703389 tcacatatactaagaatacaacgtgtttgaaaagttatagttattactactcgagatgagtatagtccctagagggagtcaagtttagttttcatatata 33703488  T
Q  301 gttgtcaaaatcaacaaaatcgttaagannnnnnnnngaatttcaatattttttccaacctttcataccattcaaattcacttgatcgccaaggtaatac 400  Q
    |||||||||||||||| |||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33703489 gttgtcaaaatcaacagaatcgttaagaattttttttgaatttcaatattttttccaacctttcataccattcaaattcacttgatcgccaaggtaatac 33703588  T
Q  401 t 401  Q
    |    
T  33703589 t 33703589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 154 - 397
Target Start/End: Original strand, 33678839 - 33679077
Alignment:
Q  154 tgtcgttcaaaaaatcaacttcatgtataaatattcacgtttattgttcacatatactaagaatacaacgtgtttgaaaagttatagtgattactactcg 253  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33678839 tgtcgttcaaaaaatcaactacatgtataaatattcacgtttattgttcacatatactaagaatacaacgtgtttgaaaagttatagtgattactactcg 33678938  T
Q  254 agatgagtatagtccctagagggagtcaagtttagttttcatatatagttgtcaaaatcaacaaaatcgttaagannnnnnnnngaatttcaatattttt 353  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||         ||||||||||||||||    
T  33678939 agatgagtatagtccctagagggagtcaagtttagttttcatatatagttgtcaaaatcaacataatcgttaagaattttttttgaatttcaatattttt 33679038  T
Q  354 tccaacctttcataccattcaaattcacttgatcgccaaggtaa 397  Q
    |||||||||||| || |||||     ||||||||||||||||||    
T  33679039 tccaacctttcaaactattca-----acttgatcgccaaggtaa 33679077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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