View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0214_high_38 (Length: 429)
Name: NF0214_high_38
Description: NF0214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0214_high_38 |
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Alignment Details
Target: chr8 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 30 - 335
Target Start/End: Complemental strand, 40567298 - 40566995
Alignment:
| Q |
30 |
gtttttaaataattttatcattaaaactcaattaaacgnnnnnnnngttttgtt-gtgttaatcgtctgattat--gaggaaagagattctgaaaattat |
126 |
Q |
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| T |
40567298 |
gtttttaaataattttatcattaaaactcaattaaatttttttttttttttttttgtgttaatcgtctgattatacgaggaaagagattctgaaaattat |
40567199 |
T |
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| Q |
127 |
ttaactaaatcaaagaacatgttctctttatcatatttagaaagaacaatgttccttttcttatc-ttttctacaagctaagtgaaccctatttatnnnn |
225 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |
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| T |
40567198 |
ttaactaaatcaaagaacatgttctctttatcatatttagaaagaacaatgttccttttctcatctttttctacaagctaagtgaacccta------aag |
40567105 |
T |
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| Q |
226 |
nnntacaacgatatgtgtcaataatatgatccaatgatatggccccattcaaggttcatagcatataattttttctcatgggagacaattagagatgaga |
325 |
Q |
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| T |
40567104 |
aaatacaacgatatgtgtcaataatatgatccaatgatatggccccattcaaggttcatagcatagaattttttctcatgggagacaattagagatgaga |
40567005 |
T |
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| Q |
326 |
atcatacctt |
335 |
Q |
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|||||||||| |
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| T |
40567004 |
atcatacctt |
40566995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 373 - 420
Target Start/End: Complemental strand, 40567001 - 40566954
Alignment:
| Q |
373 |
atacctttgatgatcatttactcctttagttgattagcttagtataat |
420 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40567001 |
atacctttgatgatcatttactcctttagttgattagcttagtataat |
40566954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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