View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0214_high_39 (Length: 428)
Name: NF0214_high_39
Description: NF0214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0214_high_39 |
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Alignment Details
Target: chr2 (Bit Score: 245; Significance: 1e-136; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 101 - 400
Target Start/End: Original strand, 33686235 - 33686535
Alignment:
| Q |
101 |
atgaaggaaggaaaaataaaccacgaagagtccatatatgatgttgttgtttttgtcgttcaaaaaatcaacttcatgtataaatattcacgtttattgt |
200 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| ||||||||| |
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| T |
33686235 |
atgaagcaaggaaaaataaaccacgaagagtccatatatgatgttgctgtttttgtcgttcaaaaaatcaactacatgtataaatattcatgtttattgt |
33686334 |
T |
|
| Q |
201 |
tcacatatactaagaatacaacgtgtttgaaaagttatagtgattactactcgagatgagtatagtccctagagggagtcaagtttagttttcatatata |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33686335 |
tcacatatactaagaatacaacgtgtttgaaaagttatagttattactactcgagatgagtatagtccctagagggagtcaagtttagttttcatatata |
33686434 |
T |
|
| Q |
301 |
gttgtcaaaatcaacaaaatcgttaag-annnnnnnngaatttcaatattttttccaacctttcataccattcaaattcacttgatcgccaaggtaatac |
399 |
Q |
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|||||||||||||||| |||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33686435 |
gttgtcaaaatcaacagaatcgttaagaattttttttgaatttcaatattttttccaacctttcataccattcaaattcacttgatcgccaaggtaatac |
33686534 |
T |
|
| Q |
400 |
t |
400 |
Q |
| |
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| |
|
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| T |
33686535 |
t |
33686535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 101 - 400
Target Start/End: Original strand, 33703289 - 33703589
Alignment:
| Q |
101 |
atgaaggaaggaaaaataaaccacgaagagtccatatatgatgttgttgtttttgtcgttcaaaaaatcaacttcatgtataaatattcacgtttattgt |
200 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| ||||||||| |
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| T |
33703289 |
atgaagcaaggaaaaataaaccacgaagagtccatatatgatgttgctgtttttgtcgttcaaaaaatcaactacatgtataaatattcatgtttattgt |
33703388 |
T |
|
| Q |
201 |
tcacatatactaagaatacaacgtgtttgaaaagttatagtgattactactcgagatgagtatagtccctagagggagtcaagtttagttttcatatata |
300 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33703389 |
tcacatatactaagaatacaacgtgtttgaaaagttatagttattactactcgagatgagtatagtccctagagggagtcaagtttagttttcatatata |
33703488 |
T |
|
| Q |
301 |
gttgtcaaaatcaacaaaatcgttaag-annnnnnnngaatttcaatattttttccaacctttcataccattcaaattcacttgatcgccaaggtaatac |
399 |
Q |
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|||||||||||||||| |||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33703489 |
gttgtcaaaatcaacagaatcgttaagaattttttttgaatttcaatattttttccaacctttcataccattcaaattcacttgatcgccaaggtaatac |
33703588 |
T |
|
| Q |
400 |
t |
400 |
Q |
| |
|
| |
|
|
| T |
33703589 |
t |
33703589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 154 - 396
Target Start/End: Original strand, 33678839 - 33679077
Alignment:
| Q |
154 |
tgtcgttcaaaaaatcaacttcatgtataaatattcacgtttattgttcacatatactaagaatacaacgtgtttgaaaagttatagtgattactactcg |
253 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33678839 |
tgtcgttcaaaaaatcaactacatgtataaatattcacgtttattgttcacatatactaagaatacaacgtgtttgaaaagttatagtgattactactcg |
33678938 |
T |
|
| Q |
254 |
agatgagtatagtccctagagggagtcaagtttagttttcatatatagttgtcaaaatcaacaaaatcgttaag-annnnnnnngaatttcaatattttt |
352 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |||||||||||||||| |
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|
| T |
33678939 |
agatgagtatagtccctagagggagtcaagtttagttttcatatatagttgtcaaaatcaacataatcgttaagaattttttttgaatttcaatattttt |
33679038 |
T |
|
| Q |
353 |
tccaacctttcataccattcaaattcacttgatcgccaaggtaa |
396 |
Q |
| |
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|||||||||||| || ||||| |||||||||||||||||| |
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|
| T |
33679039 |
tccaacctttcaaactattca-----acttgatcgccaaggtaa |
33679077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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