View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0214_high_4 (Length: 621)
Name: NF0214_high_4
Description: NF0214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0214_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 394; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 100 - 525
Target Start/End: Complemental strand, 36991614 - 36991189
Alignment:
| Q |
100 |
tcatttctcaaaataggatcttttgatttatggcctaaagaataaataaacagattcttcaatcttaagcgtaaagctgaatgttttcttgaaaaattat |
199 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
36991614 |
tcatttctcaaaataggatcttttgatttatggcctaaagaataaataaacagattcttcaatcttaagcgtaaagctgaatgttttcttgaaaatttat |
36991515 |
T |
|
| Q |
200 |
aaccataatcataaggtgcatacgtgcaactatattaaaatacaagcccaccaatgtaatatgatttcagaaacctttcgtttgaaaggaaaatgacaaa |
299 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36991514 |
aaccataatcataaggtgcatatgtgcaactatattaaaatacaagcccaacaatgtaatatgatttcagaaacctttcgtttgaaaggaaaatgacaaa |
36991415 |
T |
|
| Q |
300 |
ataatgatataaatcaatcaaaagaatgaagaccatagaagcttgtaatatagtttaagtcaatatgactcaccaagtgtggccatcacagaaaaagcaa |
399 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |
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| T |
36991414 |
ataatgatataaatcaatcaaaagaatgaagaccatagaagcttgtaatatagtttaagtcaatatgactcaccaagtgtggccatcacagcaaaagcga |
36991315 |
T |
|
| Q |
400 |
caattaggcctaccggctgcaccctcagtttttcaatgggatattggtagatattcatgttcttcattgttatgtgggtgtaccaaagtatacctccagc |
499 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |
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| T |
36991314 |
caattaggcctaccggctgcaccctcagtttttcaatgggatattggtagatattcatgttcttcattgttacgtgggtgtaccaaagtatactaccagc |
36991215 |
T |
|
| Q |
500 |
cattagatcaagtagagatctaaagt |
525 |
Q |
| |
|
|||||||||||||||||||||||||| |
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| T |
36991214 |
cattagatcaagtagagatctaaagt |
36991189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 100 - 525
Target Start/End: Complemental strand, 37017054 - 37016629
Alignment:
| Q |
100 |
tcatttctcaaaataggatcttttgatttatggcctaaagaataaataaacagattcttcaatcttaagcgtaaagctgaatgttttcttgaaaaattat |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
37017054 |
tcatttctcaaaataggatcttttgatttatggcctaaagaataaataaacagattcttcaatcttaagcgtaaagctgaatgttttcttgaaaatttat |
37016955 |
T |
|
| Q |
200 |
aaccataatcataaggtgcatacgtgcaactatattaaaatacaagcccaccaatgtaatatgatttcagaaacctttcgtttgaaaggaaaatgacaaa |
299 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37016954 |
aaccataatcataaggtgcatatgtgcaactatattaaaatacaagcccaacaatgtaatatgatttcagaaacctttcgtttgaaaggaaaatgacaaa |
37016855 |
T |
|
| Q |
300 |
ataatgatataaatcaatcaaaagaatgaagaccatagaagcttgtaatatagtttaagtcaatatgactcaccaagtgtggccatcacagaaaaagcaa |
399 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |
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|
| T |
37016854 |
ataatgatataaatcaatcaaaagaatgaagaccatagaagcttgtaatatagtttaagtcaatatgactcaccaagtgtggccatcacagcaaaagcga |
37016755 |
T |
|
| Q |
400 |
caattaggcctaccggctgcaccctcagtttttcaatgggatattggtagatattcatgttcttcattgttatgtgggtgtaccaaagtatacctccagc |
499 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |
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|
| T |
37016754 |
caattaggcctaccggctgcaccctcagtttttcaatgggatattggtagatattcatgttcttcattgttacgtgggtgtaccaaagtatactaccagc |
37016655 |
T |
|
| Q |
500 |
cattagatcaagtagagatctaaagt |
525 |
Q |
| |
|
|||||||||||||||||||||||||| |
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|
| T |
37016654 |
cattagatcaagtagagatctaaagt |
37016629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 346 - 517
Target Start/End: Original strand, 28296159 - 28296331
Alignment:
| Q |
346 |
aatatagtttaagtcaa-tatgactcaccaagtgtggccatcacagaaaaagcaacaattaggcctaccggctgcaccctcagtttttcaatgggatatt |
444 |
Q |
| |
|
||||||||| ||||||| | ||||||||||||||||||||| |||| | | |||||||| |||||| |||||||||||||| ||| | |||||||| | |
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| T |
28296159 |
aatatagttcaagtcaaatttgactcaccaagtgtggccatgacagcagcaaaaacaattatgcctactggctgcaccctcagctttccgatgggatact |
28296258 |
T |
|
| Q |
445 |
ggtagatattcatgttcttcattgttatgtgggtgtaccaaagtatacctccagccattagatcaagtagaga |
517 |
Q |
| |
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| |||||||| ||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||| ||||| |
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|
| T |
28296259 |
gatagatatttatgttcttcattgctatgtgagtgtaccaaagtataccaccagccattagatcaagcagaga |
28296331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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