View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0214_high_47 (Length: 403)

Name: NF0214_high_47
Description: NF0214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0214_high_47
NF0214_high_47
[»] chr3 (21 HSPs)
chr3 (1-399)||(34462836-34463231)
chr3 (73-399)||(34477878-34478202)
chr3 (77-255)||(34474102-34474280)
chr3 (73-334)||(27632677-27632942)
chr3 (73-334)||(34517469-34517734)
chr3 (73-162)||(34512128-34512217)
chr3 (73-250)||(27626279-27626445)
chr3 (74-162)||(27617257-27617345)
chr3 (74-162)||(34506042-34506130)
chr3 (82-162)||(34526769-34526849)
chr3 (1-75)||(34478236-34478310)
chr3 (1-56)||(27632996-27633051)
chr3 (224-337)||(34505882-34505999)
chr3 (1-56)||(34517778-34517833)
chr3 (224-337)||(27617097-27617214)
chr3 (1-75)||(34372195-34372271)
chr3 (232-347)||(34489152-34489268)
chr3 (1-56)||(27617400-27617455)
chr3 (1-56)||(34506185-34506240)
chr3 (73-146)||(34372328-34372399)
chr3 (1-51)||(34487168-34487218)
[»] scaffold1215 (1 HSPs)
scaffold1215 (73-246)||(838-1009)
[»] chr2 (2 HSPs)
chr2 (73-246)||(10526838-10527009)
chr2 (73-246)||(10533653-10533824)
[»] chr7 (1 HSPs)
chr7 (73-246)||(15741162-15741332)
[»] chr6 (1 HSPs)
chr6 (73-246)||(1575044-1575214)


Alignment Details
Target: chr3 (Bit Score: 369; Significance: 0; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 1 - 399
Target Start/End: Complemental strand, 34463231 - 34462836
Alignment:
Q  1 ctgatcttaatcaaaagatgagcattaagcaaccattttaatcaaaaactaaggaataaaatgaaataagacattgaaatttgatatctgaatgactgct 100  Q
    ||||||||||| ||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34463231 ctgatcttaataaaaagatgagcatgaagcaaccattttaataaaaaactaaggaataaaatgaaataagacattgaaatttgatatctgaatgactgct 34463132  T
Q  101 tcactgttcatatatcagatttgtcctgtgtgccatgaaaatttaggggaggaggcaatcagaaatatgcagagttcaagcttcccagccgtgccaaagg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34463131 tcactgttcatatatcagatttgtcctgtgtgccatgaaaatttaggggaggaggcaatcagaaatatgcagagttcaagcttcccagccgtgccaaagg 34463032  T
Q  201 tatctgttgcttatcttgtgatgtatgtgctttaattgtaacatagctcattttcgcatagtatttaattcttatctaaatcagttcattatggtgatat 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  34463031 tatctgttgcttatcttgtgatgtatgtgctttaattgtaacatagctcattttcgcatagtatttaattcttatctaaatcaattcattatggtgatat 34462932  T
Q  301 tacaatgtatgctttctacatagggcatttggaagccgtgggaaaactccaatgttgattgggaattgcagcatgacaagagagataccatcactaatg 399  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||    
T  34462931 tacaatgtatgctttctacatagggcatttggaagccgtgggaaaactccaatgttgattgggaatt---gcatgacaagagagataccatcactaatg 34462836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 73 - 399
Target Start/End: Complemental strand, 34478202 - 34477878
Alignment:
Q  73 attgaaatttgatatctgaatgactgcttcactgttcatatatcagatttgtcctgtgtgccatgaaaatttaggggaggaggcaatcagaaatatgcag 172  Q
    ||||||||||||||||||| ||||||| ||||||||| ||||||||||||||||| ||||  ||||||  ||||||||||| |||| ||| |   |||||    
T  34478202 attgaaatttgatatctgagtgactgcatcactgttcctatatcagatttgtcctttgtgtgatgaaagcttaggggaggatgcaaccaggatggtgcag 34478103  T
Q  173 agttcaagcttcccagccgtgccaaaggtatctgttgcttatcttgtgatgtatgtgctttaattgtaacatagctcattttc-gcatagtatttaattc 271  Q
    |  ||| |||| ||| ||  |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |  |||||||| ||||    
T  34478102 aactcacgcttaccatcctcgccaaaggtatctgttgcttatcttgtgatttatgtgctttaattgtaacatagctcagtttcagtgtagtatttgattc 34478003  T
Q  272 ttatctaaatcagttcattatggtgatattacaatgtatgctttctacatagggcatttggaagccgtgggaaaactccaatgttgattgggaattgcag 371  Q
    |||||||||||| |||||||||||| ||| | ||||||||||| |||||||||| |||||||||| | |||||||||||||||||||||||| |||   |    
T  34478002 ttatctaaatcaattcattatggtggtataaaaatgtatgcttcctacatagggaatttggaagcagcgggaaaactccaatgttgattgggcatt---g 34477906  T
Q  372 catgacaagagagataccatcactaatg 399  Q
    ||||||||||||||||||||||||||||    
T  34477905 catgacaagagagataccatcactaatg 34477878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 77 - 255
Target Start/End: Complemental strand, 34474280 - 34474102
Alignment:
Q  77 aaatttgatatctgaatgactgcttcactgttcatatatcagatttgtcctgtgtgccatgaaaatttaggggaggaggcaatcagaaatatgcagagtt 176  Q
    |||||||||||||||||||||||||||||| || |||||||||||| ||||||||||||||||||||| |||||||||| |||||| |   |||||||||    
T  34474280 aaatttgatatctgaatgactgcttcactgctcctatatcagatttatcctgtgtgccatgaaaatttcggggaggaggaaatcaggatggtgcagagtt 34474181  T
Q  177 caagcttcccagccgtgccaaaggtatctgttgcttatcttgtgatgtatgtgctttaattgtaacatagctcattttc 255  Q
    ||||||||||| || ||| |||| |||||  |||||||||||||||  || || ||||| |||||||||||||| ||||    
T  34474180 caagcttcccaaccttgcgaaagctatctactgcttatcttgtgattcatatgatttaaatgtaacatagctcactttc 34474102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 73 - 334
Target Start/End: Complemental strand, 27632942 - 27632677
Alignment:
Q  73 attgaaatttgatatctgaatgactgcttcactgttcatatatcagatttgtcctgtgtgccatgaaaatttaggggaggaggcaatcagaaatatgcag 172  Q
    ||||||| ||| ||||||| ||||||||||||||||| |||||||||||||| ||| |||| || ||   ||||||||||| |||||||| |   |||||    
T  27632942 attgaaaattggtatctgagtgactgcttcactgttcctatatcagatttgtgctgcgtgcaataaaggcttaggggaggatgcaatcaggatggtgcag 27632843  T
Q  173 agttcaagcttcccagccgtgccaaaggtatctgttgcttatcttgtgatgtatgtgctttaattgtaacatagctcattttc-gcat---agtatttaa 268  Q
    |  |||| ||||| |  |   | ||||||||||||  ||||||||||||| |||||||||||||||||| || ||| | |||| ||||   ||||||| |    
T  27632842 aactcaatcttccaaatctcacaaaaggtatctgtaacttatcttgtgatttatgtgctttaattgtaaaattgcttagtttctgcatagaagtatttga 27632743  T
Q  269 ttcttatctaaatcagttcattatggtgatattacaatgtatgctttctacatagggcatttggaa 334  Q
    ||||||| |||  || ||||||||| |||||| || ||||||||||||||||||||| ||||||||    
T  27632742 ttcttatataacccaattcattatgctgatataacgatgtatgctttctacataggggatttggaa 27632677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 73 - 334
Target Start/End: Complemental strand, 34517734 - 34517469
Alignment:
Q  73 attgaaatttgatatctgaatgactgcttcactgttcatatatcagatttgtcctgtgtgccatgaaaatttaggggaggaggcaatcagaaatatgcag 172  Q
    ||||||| ||| ||||||| ||||||||||||||||| ||||||||||||||| || |||| || ||   ||||||||||| |||||||| |   |||||    
T  34517734 attgaaaattggtatctgagtgactgcttcactgttcctatatcagatttgtcttgcgtgcaataaaggcttaggggaggatgcaatcaggatggtgcag 34517635  T
Q  173 agttcaagcttcccagccgtgccaaaggtatctgttgcttatcttgtgatgtatgtgctttaattgtaacatagctcattttc-gcat---agtatttaa 268  Q
    |  |||| ||||| |  |   | ||||||||||||  ||||||||||||| |||||||||||||||||| || ||| | |||| ||||   ||||||| |    
T  34517634 aactcaatcttccaaatctcacaaaaggtatctgtaacttatcttgtgatttatgtgctttaattgtaaaattgcttagtttctgcatagaagtatttga 34517535  T
Q  269 ttcttatctaaatcagttcattatggtgatattacaatgtatgctttctacatagggcatttggaa 334  Q
    ||||||| |||  || ||||||||| |||||| || ||||||||||||||||||||| ||||||||    
T  34517534 ttcttatataacccaattcattatgctgatataacgatgtatgctttctacataggggatttggaa 34517469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 73 - 162
Target Start/End: Complemental strand, 34512217 - 34512128
Alignment:
Q  73 attgaaatttgatatctgaatgactgcttcactgttcatatatcagatttgtcctgtgtgccatgaaaatttaggggaggaggcaatcag 162  Q
    ||||||||||||||| ||||||||||||||| ||| | |||||||||| ||||||||| ||||||||||||| |||||||||||||||||    
T  34512217 attgaaatttgatatttgaatgactgcttcaatgtccctatatcagatatgtcctgtgagccatgaaaatttgggggaggaggcaatcag 34512128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 73 - 250
Target Start/End: Complemental strand, 27626445 - 27626279
Alignment:
Q  73 attgaaatttgatatctgaatgactgcttcactgttcatatatcagatttgtcctgtgtgccatgaaaatttaggggaggaggcaatcagaaatatgcag 172  Q
    ||||||||||||||| |||||||||||| || ||| | |||||||||| ||||||||| ||||||||||| | |||||||||||||||||      | ||    
T  27626445 attgaaatttgatatttgaatgactgctacaatgtccctatatcagatatgtcctgtgagccatgaaaatatgggggaggaggcaatcagggtgccgtag 27626346  T
Q  173 agttcaagcttcccagccgtgccaaaggtatctgttgcttatcttgtgatgtatgtgctttaattgtaacatagctca 250  Q
    ||||||||||         ||| |||||||| |||||||||||||||||| |||||  ||||||||||| ||||||||    
T  27626345 agttcaagct---------tgcaaaaggtatatgttgcttatcttgtgatttatgt--tttaattgtaaaatagctca 27626279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 74 - 162
Target Start/End: Complemental strand, 27617345 - 27617257
Alignment:
Q  74 ttgaaatttgatatctgaatgactgcttcactgttcatatatcagatttgtcctgtgtgccatgaaaatttaggggaggaggcaatcag 162  Q
    |||||||||||||||  ||||| ||||||||||||| ||||||||||||||||||||||  ||||||  ||||||||||| ||||||||    
T  27617345 ttgaaatttgatatcgaaatgaatgcttcactgttcctatatcagatttgtcctgtgtgtgatgaaagcttaggggaggatgcaatcag 27617257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 74 - 162
Target Start/End: Complemental strand, 34506130 - 34506042
Alignment:
Q  74 ttgaaatttgatatctgaatgactgcttcactgttcatatatcagatttgtcctgtgtgccatgaaaatttaggggaggaggcaatcag 162  Q
    |||||||||||||||  ||||| ||||||||||||| ||||||||||||||||||||||  ||||||  ||||||||||| ||||||||    
T  34506130 ttgaaatttgatatcgaaatgaatgcttcactgttcctatatcagatttgtcctgtgtgtgatgaaagcttaggggaggatgcaatcag 34506042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 82 - 162
Target Start/End: Complemental strand, 34526849 - 34526769
Alignment:
Q  82 tgatatctgaatgactgcttcactgttcatatatcagatttgtcctgtgtgccatgaaaatttaggggaggaggcaatcag 162  Q
    ||||||||||||||||||| |||||||| ||||||||| ||||||||||||  ||||||  ||||||||||| ||||||||    
T  34526849 tgatatctgaatgactgctacactgttcctatatcagaattgtcctgtgtgtgatgaaagcttaggggaggatgcaatcag 34526769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 34478310 - 34478236
Alignment:
Q  1 ctgatcttaatcaaaagatgagcattaagcaaccattttaatcaaaaactaaggaataaaatgaaataagacatt 75  Q
    ||||||||||  ||||||||||||| |||||||||||||| |||||||| ||| || ||||||||||||||||||    
T  34478310 ctgatcttaacaaaaagatgagcatgaagcaaccattttagtcaaaaaccaagtaaaaaaatgaaataagacatt 34478236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 27633051 - 27632996
Alignment:
Q  1 ctgatcttaatcaaaagatgagcattaagcaaccattttaatcaaaaactaaggaa 56  Q
    ||||||||||| ||||||||||||| |||||||||||||| |||||||||||||||    
T  27633051 ctgatcttaataaaaagatgagcatgaagcaaccattttagtcaaaaactaaggaa 27632996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 224 - 337
Target Start/End: Complemental strand, 34505999 - 34505882
Alignment:
Q  224 tatgtgctttaattgtaacatagctcattttc-gcatag---tatttaattcttatctaaatcagttcattatggtgatattacaatgtatgctttctac 319  Q
    |||||||||||||||||| |||||||| |||| || |||   ||||| ||||||||||||  || || |||||| |||||| || |||||||||||||||    
T  34505999 tatgtgctttaattgtaaaatagctcagtttctgcgtagaagtatttgattcttatctaacccaatttattatgctgatataacgatgtatgctttctac 34505900  T
Q  320 atagggcatttggaagcc 337  Q
    |||| | |||||||||||    
T  34505899 atagtggatttggaagcc 34505882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 34517833 - 34517778
Alignment:
Q  1 ctgatcttaatcaaaagatgagcattaagcaaccattttaatcaaaaactaaggaa 56  Q
    ||||||||||| ||||||||||||| |||||||||||||| |||||||||||||||    
T  34517833 ctgatcttaataaaaagatgagcatgaagcaaccattttagtcaaaaactaaggaa 34517778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 224 - 337
Target Start/End: Complemental strand, 27617214 - 27617097
Alignment:
Q  224 tatgtgctttaattgtaacatagctcattttc-gcatag---tatttaattcttatctaaatcagttcattatggtgatattacaatgtatgctttctac 319  Q
    ||||||||||||| |||| |||||||| |||| || |||   ||||| ||||||||||||  || || |||||| |||||| || |||||||||||||||    
T  27617214 tatgtgctttaatagtaaaatagctcagtttctgcgtagaagtatttgattcttatctaacccaatttattatgctgatataacgatgtatgctttctac 27617115  T
Q  320 atagggcatttggaagcc 337  Q
    |||| | |||||||||||    
T  27617114 atagtggatttggaagcc 27617097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 34372195 - 34372271
Alignment:
Q  1 ctgatcttaatcaaaagatgagcattaagcaaccattttaatcaaaaactaagg--aataaaatgaaataagacatt 75  Q
    ||||||||||| |||||| |||||| | ||||||||| || ||||||||||| |  || ||||||||||||||||||    
T  34372195 ctgatcttaataaaaagacgagcatgaggcaaccattatagtcaaaaactaaagaaaaaaaaatgaaataagacatt 34372271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 232 - 347
Target Start/End: Complemental strand, 34489268 - 34489152
Alignment:
Q  232 ttaattgtaacatagctcattttc-gcatagtatttaattcttatctaaatcagttcattatggtgatattacaatgtatgctttctacatagggcattt 330  Q
    ||||||||||||||| ||| |||| ||||||||||| ||||| |||||| ||| |||| |||| |||||| |  ||| ||  ||||||||||| | ||||    
T  34489268 ttaattgtaacatagatcaatttcagcatagtatttgattctcatctaactcaattcaatatgttgatataatgatgcataatttctacatagcggattt 34489169  T
Q  331 ggaagccgtgggaaaac 347  Q
    |||| ||| || |||||    
T  34489168 ggaacccgcggaaaaac 34489152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 27617455 - 27617400
Alignment:
Q  1 ctgatcttaatcaaaagatgagcattaagcaaccattttaatcaaaaactaaggaa 56  Q
    |||||||| || ||||||||||||| ||| |||||| ||| |||||||||||||||    
T  27617455 ctgatcttgataaaaagatgagcatgaagtaaccatcttagtcaaaaactaaggaa 27617400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 34506240 - 34506185
Alignment:
Q  1 ctgatcttaatcaaaagatgagcattaagcaaccattttaatcaaaaactaaggaa 56  Q
    |||||||| || ||||||||||||| ||| |||||| ||| |||||||||||||||    
T  34506240 ctgatcttgataaaaagatgagcatgaagtaaccatcttagtcaaaaactaaggaa 34506185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 73 - 146
Target Start/End: Original strand, 34372328 - 34372399
Alignment:
Q  73 attgaaatttgatatctgaatgactgcttcactgttcatatatcagatttgtcctgtgtgccatgaaaatttag 146  Q
    |||||||||||||||||||||| ||| |||||| |||   ||||||||||||||  ||||  ||||||||||||    
T  34372328 attgaaatttgatatctgaatggctgtttcactcttc--ctatcagatttgtccaatgtgtgatgaaaatttag 34372399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 34487218 - 34487168
Alignment:
Q  1 ctgatcttaatcaaaagatgagcattaagcaaccattttaatcaaaaacta 51  Q
    ||||||||||| ||||||||||||| || |||||| |||| ||||||||||    
T  34487218 ctgatcttaataaaaagatgagcatgaaacaaccaatttattcaaaaacta 34487168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1215 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: scaffold1215
Description:

Target: scaffold1215; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 73 - 246
Target Start/End: Complemental strand, 1009 - 838
Alignment:
Q  73 attgaaatttgatatctgaatgactgcttcactgttcatatatcagatttgtcctgtgtgccatgaaaatttaggggaggaggcaatcagaaatatgcag 172  Q
    |||||||||||||||||||||| ||| || ||||||| |||  |||||||||||||||||  || |||||||| ||||||| | |||||| |   |||||    
T  1009 attgaaatttgatatctgaatggctgttttactgttcctat--cagatttgtcctgtgtgtgataaaaatttaagggaggatgtaatcaggatggtgcag 912  T
Q  173 agttcaagcttcccagccgtgccaaaggtatctgttgcttatcttgtgatgtatgtgctttaattgtaacatag 246  Q
    ||||||||  ||||| |   |||||||||||||||| ||| ||||||||| ||||||||| |||||||||||||    
T  911 agttcaagactcccaacatcgccaaaggtatctgttacttgtcttgtgatttatgtgcttaaattgtaacatag 838  T

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Target: chr2 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 73 - 246
Target Start/End: Complemental strand, 10527009 - 10526838
Alignment:
Q  73 attgaaatttgatatctgaatgactgcttcactgttcatatatcagatttgtcctgtgtgccatgaaaatttaggggaggaggcaatcagaaatatgcag 172  Q
    |||||||||||||||||||||| ||| || ||||||| |||  |||||||||||||||||  || |||||||| ||||||| | |||||| |   |||||    
T  10527009 attgaaatttgatatctgaatggctgttttactgttcctat--cagatttgtcctgtgtgtgataaaaatttaagggaggatgtaatcaggatggtgcag 10526912  T
Q  173 agttcaagcttcccagccgtgccaaaggtatctgttgcttatcttgtgatgtatgtgctttaattgtaacatag 246  Q
    ||||||||  ||||| |   |||||||||||||||| ||| ||||||||| ||||||||| |||||||||||||    
T  10526911 agttcaagactcccaacatcgccaaaggtatctgttacttgtcttgtgatttatgtgcttaaattgtaacatag 10526838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 73 - 246
Target Start/End: Complemental strand, 10533824 - 10533653
Alignment:
Q  73 attgaaatttgatatctgaatgactgcttcactgttcatatatcagatttgtcctgtgtgccatgaaaatttaggggaggaggcaatcagaaatatgcag 172  Q
    |||||||||||||||||||||| ||| || ||||||| |||  |||||||||||||||||  || |||| ||||||||||| | |||||| |   |||||    
T  10533824 attgaaatttgatatctgaatggctgttttactgttcctat--cagatttgtcctgtgtgtgataaaaacttaggggaggatgtaatcaggatggtgcag 10533727  T
Q  173 agttcaagcttcccagccgtgccaaaggtatctgttgcttatcttgtgatgtatgtgctttaattgtaacatag 246  Q
    ||||||||  ||||| |   |||||||||||||||| ||| ||||||||| ||||||||| |||||||||||||    
T  10533726 agttcaagactcccaacatcgccaaaggtatctgttacttgtcttgtgatttatgtgcttaaattgtaacatag 10533653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 73 - 246
Target Start/End: Original strand, 15741162 - 15741332
Alignment:
Q  73 attgaaatttgatatctgaatgactgcttcactgttcatatatcagatttgtcctgtgtgccatgaaaatttaggggaggaggcaatcagaaatatgcag 172  Q
    ||||||||||||||||||| || | | |||||||||| |||  |||||||||||||||||  || |||||||||||||||| | |||||| |   |||||    
T  15741162 attgaaatttgatatctgactggccg-ttcactgttcctat--cagatttgtcctgtgtgtgataaaaatttaggggaggatgtaatcaggatggtgcag 15741258  T
Q  173 agttcaagcttcccagccgtgccaaaggtatctgttgcttatcttgtgatgtatgtgctttaattgtaacatag 246  Q
    |||||||||||||||  |  ||||||||||| |||| | | ||||||||| ||||||||| |||||||||||||    
T  15741259 agttcaagcttcccaatctcgccaaaggtatttgttacctgtcttgtgatttatgtgcttaaattgtaacatag 15741332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 73 - 246
Target Start/End: Complemental strand, 1575214 - 1575044
Alignment:
Q  73 attgaaatttgatatctgaatgactgcttcactgttcatatatcagatttgtcctgtgtgccatgaaaatttaggggaggaggcaatcagaaatatgcag 172  Q
    ||||||||||||||||||| || | | |||||||||| |||  |||||||||||||||||  || |||||||||||||||| | |||||| |   |||||    
T  1575214 attgaaatttgatatctgactggccg-ttcactgttcctat--cagatttgtcctgtgtgtgataaaaatttaggggaggatgtaatcaggatggtgcag 1575118  T
Q  173 agttcaagcttcccagccgtgccaaaggtatctgttgcttatcttgtgatgtatgtgctttaattgtaacatag 246  Q
    |||||||||||||||  |  ||||||||||| |||| | | ||||||||| ||||||||| |||||||||||||    
T  1575117 agttcaagcttcccaatctcgccaaaggtatttgttacctgtcttgtgatttatgtgcttaaattgtaacatag 1575044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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