View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0214_high_48 (Length: 403)
Name: NF0214_high_48
Description: NF0214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0214_high_48 |
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Alignment Details
Target: chr5 (Bit Score: 330; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 30 - 390
Target Start/End: Complemental strand, 38122596 - 38122235
Alignment:
| Q |
30 |
gttctgaagctggaatgcagccctttgcaactaagtacaccacctccaacatcattcaaattatttgggtcgttgtgaaagaaattttggcgcacaagta |
129 |
Q |
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| T |
38122596 |
gttctaaagctggaatgcagccctttgcaactaagtacaccacctccaacatcattcaaattatttgggtcgttgtgaaagaaattttggcgcacaagca |
38122497 |
T |
|
| Q |
130 |
gacagcccctgcaatagatattaccaagatattattactgttattattctatattacat-aaaaaatgcatttagttatgcaagcacgcactgtttggca |
228 |
Q |
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| T |
38122496 |
gacagcccctgcaatagataataccaagatattattactgttgttattctatattacatgaaaaaatgcatttagttatgcaagcacgcactgtttggca |
38122397 |
T |
|
| Q |
229 |
gcatgttgtctcaagataatatcaagaaccctaatggcttcttgataattctcagcttcatgcccctttaaggcattggcaatggcctgcagaggaattt |
328 |
Q |
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| T |
38122396 |
gaatgttgtctcaagataatatcaagaaccctaatggcttcttgataattctcagcttcatgcccctttaaggcattggcaatggcctgcagaggaattt |
38122297 |
T |
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| Q |
329 |
ccttagcaaagttgatttcaactttataagtcttcgaacggtgtgattttcttatcctcttc |
390 |
Q |
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| T |
38122296 |
ccttagcaaagttgatttcaactttataagtcttcgaacggtatgattttcttatcctcttc |
38122235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 33 - 378
Target Start/End: Complemental strand, 38114104 - 38113753
Alignment:
| Q |
33 |
ctgaagctggaatgcagccctttgcaactaagtacaccacctccaacatcattcaaattatttgggtcgttgtgaaagaaattttggcgcacaagtagac |
132 |
Q |
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| T |
38114104 |
ctgaagctagaatgcagccctctgcatccaagaacaccacctcctacatctgtgaaatttttcggatcattgtggaaaaagttttggcggacaagcagac |
38114005 |
T |
|
| Q |
133 |
agcccctgcaatagat-attaccaagatattattactgttattattctatattacat--aaaaaatgcatttagtt--atgcaa-gcacgcactgtttgg |
226 |
Q |
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||||||| || ||||| ||||| ||||||||| | | || ||||| ||||||| || ||||||| |||||| ||| || || || ||||||||| |
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| T |
38114004 |
agcccctacagtagattattacaaagatattagtgcccttgttattttatattaaattaaaaaaatacatttataacaatggaaagcgcgtactgtttgg |
38113905 |
T |
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| Q |
227 |
cagcatgttgtctcaagataatatcaagaaccctaatggcttcttgataattctcagcttcatgcccctttaaggcattggcaatggcctgcagaggaat |
326 |
Q |
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| T |
38113904 |
cagcatgttgcctcaagataatgtcaagaaccctaatcgcttcttgataattctcagtttcatgcccttttaaggcattggcgatggcctgcagagggat |
38113805 |
T |
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| Q |
327 |
ttccttagcaaagttgatttcaactttataagtcttcgaacggtgtgatttt |
378 |
Q |
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| T |
38113804 |
ctttgaggcaaagctgatttcaactttgtaggtctttgatcggtgtgatttt |
38113753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 91; Significance: 6e-44; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 30 - 356
Target Start/End: Complemental strand, 14915000 - 14914674
Alignment:
| Q |
30 |
gttctgaagctggaatgcagccctttgcaactaagtacaccacctccaacatcattcaaattatttgggtcgttgtgaaagaaattttggcgcacaagta |
129 |
Q |
| |
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||||| ||||| ||||||| |||| |||| | |||||| ||||| || |||| || ||| | | || ||||| || |||||| ||||||||||||| | |
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| T |
14915000 |
gttctaaagctcgaatgcaaccctctgcatccaagtactccaccacctacattcttgaaactcctgggatcgttatggaagaaactttggcgcacaagca |
14914901 |
T |
|
| Q |
130 |
gacagcccctgcaatagatattaccaagatattattactgttattattctatattacataaaaaatgcatttagttatgcaagcacgcactgtttggcag |
229 |
Q |
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||| || |||| || ||||||| |||||||||||| |||| || ||| |||||| | |||| | ||| || | ||| || ||||||||||||||||| |
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| T |
14914900 |
aacatcctctgcgatggatattaaaaagatattattaatgttgttgttcgatattaagttaaaattacatatattaatgaaaacacgcactgtttggcag |
14914801 |
T |
|
| Q |
230 |
catgttgtctcaagataatatcaagaaccctaatggcttcttgataattctcagcttcatgcccctttaaggcattggcaatggcctgcagaggaatttc |
329 |
Q |
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||||||||||||||||| ||||||||||||| | |||||||||||||||||| | ||| || ||||| ||||| || ||||||||||||||||||||| |
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| T |
14914800 |
catgttgtctcaagatagtatcaagaacccttagggcttcttgataattctcggtttcttgacccttaaaggctctgtcaatggcctgcagaggaatttt |
14914701 |
T |
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| Q |
330 |
cttagcaaagttgatttcaactttata |
356 |
Q |
| |
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||| ||||||||||||||||||| |
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| T |
14914700 |
tgatgcatagttgatttcaactttata |
14914674 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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