View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0214_high_51 (Length: 395)
Name: NF0214_high_51
Description: NF0214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0214_high_51 |
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Alignment Details
Target: chr8 (Bit Score: 296; Significance: 1e-166; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 4 - 388
Target Start/End: Complemental strand, 28380043 - 28379653
Alignment:
| Q |
4 |
gtattctcagaacaagcacagagcaagaaacaaaacttcataatcattcctaaccaccaaaagaagataacattattgttcttcttactcaacatcttca |
103 |
Q |
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| T |
28380043 |
gtattctcagaacaagcacagagcaagaaacaaaacttcataatcattcctaaccaccaaaagaagataacattattgttcttcttactcaacatcttca |
28379944 |
T |
|
| Q |
104 |
tcttc------tcttaacctgcaaaagtaaaaatatgaagctgcatttcatcagaaacatagttcaaggctaaaatagaagaaaataattaaaaaattta |
197 |
Q |
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| T |
28379943 |
tcttcatcttctcttaacctacaaaagtaaaaatttgaagctgcatttcatcagaaacatagttcaaggctaaaatagaagaaaataattaaaaaaatta |
28379844 |
T |
|
| Q |
198 |
atgctattaaactaccataccatatataaatgtaatgataattaaaagaatttcaacaagaaaggaaataagacatggacgaaccttagaatatactaaa |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28379843 |
atgctattaaactaccataccatatataaatgtaatgataattaaaagaatttcaacaagaaaggaaataagacatggacgaaccttagaatatactaaa |
28379744 |
T |
|
| Q |
298 |
tgtattaattttcttcatggnnnnnnnnnnnnnccatagaagatgaaagaataaaagaccaagtgagannnnnnngttttctcctatgata |
388 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
28379743 |
tgtattaattttcttcatggaaaaaacaaaaaaccatagaagatgaaagaataaaagaccaagtgagatttttttgttttctcctatgata |
28379653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 7 - 317
Target Start/End: Complemental strand, 28389682 - 28389364
Alignment:
| Q |
7 |
ttctcagaacaagcacagagcaagaaacaaaacttcataatcattcctaaccaccaaaagaagataacattattgttcttcttactcaacatcttcatct |
106 |
Q |
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||||||| |||| |||| | ||||||||| || | || ||||||||| ||||||||| | |||||||||| ||||||||||||||||||| ||||||| |
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| T |
28389682 |
ttctcagcacaaacacataacaagaaacagaattgcacaatcattccaaaccaccaatataagataacatgtttgttcttcttactcaacactttcatct |
28389583 |
T |
|
| Q |
107 |
tc------tcttaacctgcaaaagtaaaaatatgaagctgcatttcatcagaaacatagttcaaggctaaaatagaagaaaataattaaaaaatttaatg |
200 |
Q |
| |
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|| ||||||||| ||||||||||||| |||||||||||||||| ||||||||| ||||||||||||| || ||||| ||||||||||| |||||| |
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|
| T |
28389582 |
tcatcatttcttaacctacaaaagtaaaaatttgaagctgcatttcataagaaacatatttcaaggctaaaaaagtagaaattaattaaaaaaattaatg |
28389483 |
T |
|
| Q |
201 |
ctattaaactaccataccatatataaatgtaatgataattaaaagaatttcaacaagaaaggaaat-----aagacatggacgaaccttagaatatacta |
295 |
Q |
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|||||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| || |
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| T |
28389482 |
ctattaaactactataccatatataaatatgatgataattaaaagaatttcaacaagaaaagaaatttttaaagacatggacgaaccttagaata---ta |
28389386 |
T |
|
| Q |
296 |
aatgtattaattttcttcatgg |
317 |
Q |
| |
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|||||||||||||||||||||| |
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|
| T |
28389385 |
aatgtattaattttcttcatgg |
28389364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 4 - 108
Target Start/End: Original strand, 28414981 - 28415085
Alignment:
| Q |
4 |
gtattctcagaacaagcacagagcaagaaacaaaacttcataatcattcctaaccaccaaaagaagataacattattgttcttcttactcaacatcttca |
103 |
Q |
| |
|
||||||| |||||||||||| ||||||||||| ||||||| ||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |||| |
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|
| T |
28414981 |
gtattctgagaacaagcacatagcaagaaacagaacttcacaatcattccaaaccaccaaaagaagataacattattgttcttcatactcaacacgttca |
28415080 |
T |
|
| Q |
104 |
tcttc |
108 |
Q |
| |
|
||||| |
|
|
| T |
28415081 |
tcttc |
28415085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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