View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0214_high_52 (Length: 390)
Name: NF0214_high_52
Description: NF0214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0214_high_52 |
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Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 86 - 311
Target Start/End: Complemental strand, 39582415 - 39582189
Alignment:
| Q |
86 |
gaatagatggtcccgactttcttcttctatgaagcaaagagg-caaatggtgtctatactcaatccttttcgcttcggtctacatctatctagtaggaag |
184 |
Q |
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| T |
39582415 |
gaatagatggtcccgactttcttcttctatgaagcaaagagggcaaatggtgtctatactcaatccttttcgcttcggtctacatctatctagtaggaag |
39582316 |
T |
|
| Q |
185 |
gatgtctctagctagtctccatagaaaataaattattatattaagtgcatctataatccgaaccaaccaatcacgttttaacagagatttttcatttttc |
284 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |
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| T |
39582315 |
gatatctctagctagtctccatagaaaataaattattatattaagtgcatctataatccaaaccaaccaatcacgttttaacagggatttttcatttttc |
39582216 |
T |
|
| Q |
285 |
aggtctctaatggttccagtagttgtt |
311 |
Q |
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| T |
39582215 |
aggtctctaatggttccagtagttgtt |
39582189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 210 - 266
Target Start/End: Complemental strand, 39581600 - 39581544
Alignment:
| Q |
210 |
aaataaattattatattaagtgcatctataatccgaaccaaccaatcacgttttaac |
266 |
Q |
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||||||||||||||| ||||||| || | ||||| ||||||||||||| |||||||| |
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| T |
39581600 |
aaataaattattataataagtgcgtcgaaaatccaaaccaaccaatcatgttttaac |
39581544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 291
Target Start/End: Complemental strand, 39577042 - 39576961
Alignment:
| Q |
210 |
aaataaattattatattaagtgcatctataatccgaaccaaccaatcacgttttaacagagatttttcatttttcaggtctc |
291 |
Q |
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||||||||||||||| ||| || ||||| ||||| ||| |||||||||||| ||||| ||| |||| ||||||| ||||| |
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| T |
39577042 |
aaataaattattataataaatgtatctaaaatcctaactaaccaatcacgtcttaacgtagagctttcctttttcatgtctc |
39576961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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