View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0214_high_61 (Length: 363)
Name: NF0214_high_61
Description: NF0214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0214_high_61 |
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Alignment Details
Target: chr4 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 29 - 343
Target Start/End: Original strand, 49292811 - 49293124
Alignment:
| Q |
29 |
aggaaagttaaacagtatatgccacatcgtttggccaatacaattagttttgccgataaatactcatcttgtacaatgtttgaaacacacgattaatcaa |
128 |
Q |
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| T |
49292811 |
aggaaggttaaacagtatatgccacatcgtttggccaatacgattagttttgccgataaatactcatcttgtacaatgtttgaaacacacgactaatcaa |
49292910 |
T |
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| Q |
129 |
atgtaagttgtctacgcaatattatccctttactttttgtgattgtttatatttacaagtatttcttagtttagtagctaaaacctccnnnnnnngcaca |
228 |
Q |
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| T |
49292911 |
atgtaagttatctacgcaatattatccctttactttttgtgattgtttatatttacatgtatttcttagtttagtagctaaaacccccaaaaaaagcaca |
49293010 |
T |
|
| Q |
229 |
cattatttaacgctttactatagtaattaaggaactcatagttgaggaatgaagtttcttcctcaacaaaatagattgaataaagagaatcacagtgaag |
328 |
Q |
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||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
49293011 |
cattatttaacgctttaatatagtaatt-aggaactcatagttgaggaatgaagtttcttcctcaacaaaatagattgaataaagagaatcacagttgag |
49293109 |
T |
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| Q |
329 |
gactatcaacccata |
343 |
Q |
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||||||||||||||| |
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| T |
49293110 |
gactatcaacccata |
49293124 |
T |
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