View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0214_high_63 (Length: 356)
Name: NF0214_high_63
Description: NF0214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0214_high_63 |
 | |
|
| [»] scaffold0133 (2 HSPs) |
| | |
|
| [»] scaffold0256 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 260; Significance: 1e-145; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 30 - 345
Target Start/End: Complemental strand, 16782422 - 16782107
Alignment:
| Q |
30 |
tttattatgctagtttttggaatgtgattctagtccgtttaacagttattatcaacaattaagccatacctttgaaagaggacaatttttctaggcactg |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
16782422 |
tttattatgctagtttttggaatgtgattctagtccgtttaacagttattatcaacaattaagccatacctttgaaagagaacaatttttctaggcactg |
16782323 |
T |
|
| Q |
130 |
agcaaatgaatggacatgatcttgnnnnnnncccactgtcatgtagttttcctcactgtcatgtactgatannnnnnnnnctatagcaaccaatattcac |
229 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
16782322 |
agcaaatgaatggacatgatcttgtttttttcccactgtcatgtagttttcctcactgtcatgtactgatatttttttttctatagcaaccaatattcac |
16782223 |
T |
|
| Q |
230 |
aagttgcagaaaaactacatccactgatttaatacataatctttgaaaacaaataacaactcatatttcatcttcctagagcaaagtcatctctaatcta |
329 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16782222 |
aagttgcagaaaaactacatccactgatttaatagataatctttgaaaacaaataacaactcatatttcatcttcctagagcaaagtcatctctaatcta |
16782123 |
T |
|
| Q |
330 |
aacaactttgattcat |
345 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
16782122 |
aacaactttgattcat |
16782107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 34 - 148
Target Start/End: Complemental strand, 16839760 - 16839645
Alignment:
| Q |
34 |
ttatgctag-tttttggaatgtgattctagtccgtttaacagttattatcaacaattaagccatacctttgaaagaggacaatttttctaggcactgagc |
132 |
Q |
| |
|
||||||||| ||||||||||| |||||| ||| ||||||| ||||| |||| |||| |||| ||||||||| ||| ||||| || ||| |||||||| |
|
|
| T |
16839760 |
ttatgctagatttttggaatgagattcttctccatttaacaattattctcaataattgagccctacctttgacagacaacaatattcctaagcactgagt |
16839661 |
T |
|
| Q |
133 |
aaatgaatggacatga |
148 |
Q |
| |
|
|||| || |||||||| |
|
|
| T |
16839660 |
aaataaacggacatga |
16839645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0133 (Bit Score: 100; Significance: 2e-49; HSPs: 2)
Name: scaffold0133
Description:
Target: scaffold0133; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 210 - 345
Target Start/End: Complemental strand, 9644 - 9509
Alignment:
| Q |
210 |
ctatagcaaccaatattcacaagttgcagaaaaactacatccactgatttaatacataatctttgaaaacaaataacaactcatatttcatcttcctaga |
309 |
Q |
| |
|
|||||||| ||||| || ||| ||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9644 |
ctatagcagccaattttgacatgttgcagaagaactacatccactgatttaatatataatctttgaaaacaaataacaactcatatttcatcttcctaga |
9545 |
T |
|
| Q |
310 |
gcaaagtcatctctaatctaaacaactttgattcat |
345 |
Q |
| |
|
||||| ||||||| |||| ||||||||||||||||| |
|
|
| T |
9544 |
gcaaaatcatctccaatccaaacaactttgattcat |
9509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0133; HSP #2
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 237 - 345
Target Start/End: Complemental strand, 13965 - 13857
Alignment:
| Q |
237 |
agaaaaactacatccactgatttaatacataatctttgaaaacaaataacaactcatatttcatcttcctagagcaaagtcatctctaatctaaacaact |
336 |
Q |
| |
|
|||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |||||||| |
|
|
| T |
13965 |
agaagaactacatccactgatttaatatataatctttgaaaacaaataacaactcatatttcatcttcctagagcaaaatcatctccaatccaaacaact |
13866 |
T |
|
| Q |
337 |
ttgattcat |
345 |
Q |
| |
|
||||||||| |
|
|
| T |
13865 |
ttgattcat |
13857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 74; Significance: 7e-34; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 161 - 332
Target Start/End: Original strand, 38938331 - 38938502
Alignment:
| Q |
161 |
cccactgtcatgtagttttcctcactgtcatgtactgatannnnnnnnn-ctatagcaaccaatattcacaagttgcagaaaaactacatccactgattt |
259 |
Q |
| |
|
||||| |||||||||||||| |||||||||||||||||| ||| |||| |||||||| ||||||||||||| |||||||||||||||||| |
|
|
| T |
38938331 |
cccacagtcatgtagttttcgtcactgtcatgtactgattttttttctctctacagcagccaatattgacaagttgcagaagaactacatccactgattt |
38938430 |
T |
|
| Q |
260 |
aatacataatctttgaaaacaaataacaactcatatttcatcttcctagagcaaagtcatctctaatctaaac |
332 |
Q |
| |
|
|||| | |||||||||||| ||||||| || ||||||||||||||||||||||||| |||||| |||| |||| |
|
|
| T |
38938431 |
aatagacaatctttgaaaaaaaataactacacatatttcatcttcctagagcaaag-catctccaatccaaac |
38938502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 45 - 84
Target Start/End: Original strand, 38938237 - 38938277
Alignment:
| Q |
45 |
tttggaatgtgattctagt-ccgtttaacagttattatcaa |
84 |
Q |
| |
|
||||||||||||||||||| |||||||||| |||||||||| |
|
|
| T |
38938237 |
tttggaatgtgattctagtcccgtttaacaattattatcaa |
38938277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0256 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0256
Description:
Target: scaffold0256; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 210 - 305
Target Start/End: Complemental strand, 10264 - 10169
Alignment:
| Q |
210 |
ctatagcaaccaatattcacaagttgcagaaaaactacatccactgatttaatacataatctttgaaaacaaataacaactcatatttcatcttcc |
305 |
Q |
| |
|
|||||||| |||| || ||| |||||| || |||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
10264 |
ctatagcagtcaattttgacatgttgcaaaagaactacatccactgatttaatatataatctttgaaaacaaataacaacgcatatttcatcttcc |
10169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 278 - 332
Target Start/End: Original strand, 11983113 - 11983167
Alignment:
| Q |
278 |
acaaataacaactcatatttcatcttcctagagcaaagtcatctctaatctaaac |
332 |
Q |
| |
|
|||||||| ||| |||||||||||||| ||||||||||||||||| |||| |||| |
|
|
| T |
11983113 |
acaaataataacgcatatttcatcttcatagagcaaagtcatctccaatccaaac |
11983167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 149
Target Start/End: Original strand, 11982816 - 11982865
Alignment:
| Q |
100 |
tttgaaagaggacaatttttctaggcactgagcaaatgaatggacatgat |
149 |
Q |
| |
|
|||||||||| ||||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
11982816 |
tttgaaagagaacaatgtttctgctcactgagcaaatgaatggacatgat |
11982865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1553 times since January 2019
Visitors: 2392