View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0214_high_78 (Length: 339)
Name: NF0214_high_78
Description: NF0214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0214_high_78
Alignment Details
Target: chr4 (Bit Score: 178; Significance: 6e-96; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 78 - 289
Target Start/End: Original strand, 43928254 - 43928463
Alignment:
Q
78
atgaagcggagataaaaaccagaaggaaatgtaaaacaagaacaaggattgaaatcaaaacatattaaagaaaagttatatnnnnnnntaaaaggatttt
177
Q
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
T
43928254
atgaagcggagataaaaaccagaaggaaatgtaaaacaagaagaaggattgaaatcaaaacatattaaagaaaagttatataaaaa--taaaaggatttt
43928351
T
Q
178
tggttttgcagagttggaatggaacttcttcacaaaccaactaactgcgcgcaacctgcaacggtctgtgatcctctgctttgtcatttttccccttcct
277
Q
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
T
43928352
tggttttgcagagttggaatggaacttcttcacaaaccaactaactgcgcgcaacctgcaacggtctgtgatcctctgctttgtcattttcccccttcct
43928451
T
Q
278
ctaactcccaat
289
Q
||||||||||||
T
43928452
ctaactcccaat
43928463
T
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Alignment Overview ]
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