View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0214_high_90 (Length: 307)
Name: NF0214_high_90
Description: NF0214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0214_high_90 |
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Alignment Details
Target: chr5 (Bit Score: 144; Significance: 1e-75; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 30 - 303
Target Start/End: Original strand, 40743659 - 40743934
Alignment:
| Q |
30 |
ttagaagcatctcttatgggtaaattactcttaaatatttccttatttttctttcaatacttgcatttataaaaatcactttttaaaaagaaagaaatag |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40743659 |
ttagaagcatctcttatgggtaaattactcttaaatatttccttatttttctttcaatacttgcatttataaaaatcactttttaaaaagaaagaaatag |
40743758 |
T |
|
| Q |
130 |
at--tnnnnnnnnnnnnntcttcaggagaagctactcaaaacaacttcttatttgatagtacaatttttaaatgnnnnnnnctttcagattcttatnnnn |
227 |
Q |
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|| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
40743759 |
ataaaaaaaaaaaaaaaatcttcaagagaagctactcaaaacaacttcttatttgatagtacaatttttaaatttttttttctttcagattcttataaaa |
40743858 |
T |
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| Q |
228 |
nnnnnnnnnnntttataacaaatagatgaaaactcctaaaaaggacatattcatggttggacaattcatctcactc |
303 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
40743859 |
aaaataaaaaatttataacaaatagatgaaaactcctaaaaaggacatattcatggttggacaattcatttcactc |
40743934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 30 - 131
Target Start/End: Original strand, 40756175 - 40756276
Alignment:
| Q |
30 |
ttagaagcatctcttatgggtaaattactcttaaatatttccttatttttctttcaatacttgcatttataaaaatcactttttaaaaagaaagaaatag |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40756175 |
ttagaagcatctcttatgggtaaattactcttaaatatttccttatttttctttcaatacttgcatttataaaaatcactttttaaaaagaaagaaatag |
40756274 |
T |
|
| Q |
130 |
at |
131 |
Q |
| |
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|| |
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|
| T |
40756275 |
at |
40756276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 146 - 185
Target Start/End: Original strand, 40756294 - 40756333
Alignment:
| Q |
146 |
tcttcaggagaagctactcaaaacaacttcttatttgata |
185 |
Q |
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|||||| |||||||||||||| |||||||||||||||||| |
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| T |
40756294 |
tcttcaagagaagctactcaacacaacttcttatttgata |
40756333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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