View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0214_high_91 (Length: 305)
Name: NF0214_high_91
Description: NF0214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0214_high_91
Alignment Details
Target: chr7 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 21 - 242
Target Start/End: Original strand, 14725546 - 14725767
Alignment:
Q
21
agcacagaacaacaaaatcaaattnnnnnnngaaacaggtatgcaatttctaaagtaagagtcaaaactagccttctatatgcagcaagactgataggaa
120
Q
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
14725546
agcacagaacaacaaaatcaaattaaaaaaagaaacaggtatgcaatttctaaagtaagagtcaaaactagccttctatatgcagcaagactgataggaa
14725645
T
Q
121
caggtttataattcatatacatcaattgaatccttactttccaccttcaatgtaatagttctcctagtaagagtcttcgcatatattttcattaccacca
220
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
14725646
caggtttataattcatatacatcaattgaatccttactttccaccttcaatgtaatagttctcctagtaagagtcttcgcatatattttcattaccacca
14725745
T
Q
221
cgaaccagcaaaaccatattat
242
Q
||||||||||||||||||||||
T
14725746
cgaaccagcaaaaccatattat
14725767
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr5 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 21 - 242
Target Start/End: Complemental strand, 17597964 - 17597743
Alignment:
Q
21
agcacagaacaacaaaatcaaattnnnnnnngaaacaggtatgcaatttctaaagtaagagtcaaaactagccttctatatgcagcaagactgataggaa
120
Q
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
17597964
agcacagaacaacaaaatcaaattaaaaaaagaaacaggtatgcaatttctaaagtaagagtcaaaactagccttctatatgcagcaagactgataggaa
17597865
T
Q
121
caggtttataattcatatacatcaattgaatccttactttccaccttcaatgtaatagttctcctagtaagagtcttcgcatatattttcattaccacca
220
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
17597864
caggtttataattcatatacatcaattgaatccttactttccaccttcaatgtaatagttctcctagtaagagtcttcgcatatattttcattaccacca
17597765
T
Q
221
cgaaccagcaaaaccatattat
242
Q
||||||||||||||||||||||
T
17597764
cgaaccagcaaaaccatattat
17597743
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 61 - 212
Target Start/End: Original strand, 31249233 - 31249396
Alignment:
Q
61
atgcaatttctaaagtaagagtcaaaactagccttctatatgcagcaag-actgataggaacaggtttataattcatatacat-----------caattg
148
Q
|||| |||||||||||||| |||||||||||||||| |||||||| ||| ||| ||||||||| ||| |||||| |||||||| ||| ||
T
31249233
atgccatttctaaagtaagtgtcaaaactagccttccatatgcagtaagtactaataggaacatgttcataatttatatacattatttaattatcaagtg
31249332
T
Q
149
aatccttactttccaccttcaatgtaatagttctcctagtaagagtcttcgcatatattttcat
212
Q
|||| |||||||||||||| |||||||||||||||| |||||| ||||| |||||||||||||
T
31249333
aatcattactttccacctttaatgtaatagttctcccggtaagattcttcacatatattttcat
31249396
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
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