View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0214_low_1 (Length: 786)
Name: NF0214_low_1
Description: NF0214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0214_low_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 588; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 588; E-Value: 0
Query Start/End: Original strand, 90 - 783
Target Start/End: Complemental strand, 27985687 - 27984996
Alignment:
| Q |
90 |
taatggttctgagttgcttctgagggttcgttgctggcggtgagagataccatgtcgttgaagaacaaatatggcctaaaaaatgtgcccccaaatcatt |
189 |
Q |
| |
|
|||||||| |||||||||| ||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27985687 |
taatggttgtgagttgcttgtgatggttcgttgctggcggtgagagataccatgttgttgaagaacaaatatggcctaaaaaatgtgcccccaaatcatt |
27985588 |
T |
|
| Q |
190 |
tggaggggcaaatgaagcaatgtgacagaagcaaaccagttgcagacaataaaacttagcacaccacaccattaaacnnnnnnnnncgatggcatgaaaa |
289 |
Q |
| |
|
||||| |||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
27985587 |
tggagtggcaaaagaagcaatgtgacagaaacaaaccagttgcagacaataaaacttagcacaccacaccattaaacaaaaaaaaaagatggcatgaaaa |
27985488 |
T |
|
| Q |
290 |
tttggagtgcgttaatagcgtgagttgaactcaaatctgttaagtagcaacgtaaacatatattctattgataggttctgttaggaacctaacccagcta |
389 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
27985487 |
tttggagtgcgttaatagcgtgagttgaactcaaatctgtta--tagcaacgtaaaaatatattctattgataggttcctaacagaacctaacccagcta |
27985390 |
T |
|
| Q |
390 |
aattcatttctaatcttaactaaaaagtaactcaaatttagaaaaactgccacttgtttatatactgaagccaacattctgaaactttacttttctacca |
489 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27985389 |
aattcatttctaatcttaactaaaaagtaactcaaatttagaaaaactgccacttgtttatatactgaagccaacattctgaaactttacttttctacca |
27985290 |
T |
|
| Q |
490 |
aaccttcttccagccgccagttctttcatatagtcctgtcctagaggggacttgtggagaaacagcatctgaagcaccggccaagcgcagaaacacacta |
589 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27985289 |
aaccttcttccagccgccagttctttcatatagtcctgtcctagaggggacttgtggagaaacagcatctgaagcaccggccaagcgcagaaacacacta |
27985190 |
T |
|
| Q |
590 |
gctcttttatacgttgcaccgtttttgctctgttgtctgacatctttaatgctttcatattgatattgcttattttctcttgacatgttattcaccaagt |
689 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27985189 |
gctcttttatacattgcaccgtttttgctctgttgtctgacatctttaatgctttcatattgatattgcttattttctcttgacatgttattcaccaagt |
27985090 |
T |
|
| Q |
690 |
cctttccattggcatcattctgattcttcgaagcaacacccttcgaagaaaaatttaagcgagaaaaaacgctggttttttctttgggttcatc |
783 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
27985089 |
cctttccattggcatcattctgattcttcgaagcaacacccttcgaagaaaaatttaagcgagaaaacacgctggttttttctttgggttcatc |
27984996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 581; E-Value: 0
Query Start/End: Original strand, 90 - 783
Target Start/End: Complemental strand, 28072218 - 28071526
Alignment:
| Q |
90 |
taatggttctgagttgcttctgagggttcgttgctggcggtgagagataccatgtcgttgaagaacaaatatggcctaaaaaatgtgcccccaaatcatt |
189 |
Q |
| |
|
|||||||| |||||||||| ||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28072218 |
taatggttgtgagttgcttgtgatggttcgttgctggcggtgagagataccatgttgttgaagaacaaatatggcctaaaaaatgtgcccccaaatcatt |
28072119 |
T |
|
| Q |
190 |
tggaggggcaaatgaagcaatgtgacagaagcaaaccagttgcagacaataaaacttagcacaccacaccattaaacnnnnnnnnnc-gatggcatgaaa |
288 |
Q |
| |
|
||||| |||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
28072118 |
tggagtggcaaaagaagcaatgtgacagaaacaaaccagttgcagacaataaaacttagcacaccacaccattaaacaaaaaaaaaaagatggcatgaaa |
28072019 |
T |
|
| Q |
289 |
atttggagtgcgttaatagcgtgagttgaactcaaatctgttaagtagcaacgtaaacatatattctattgataggttctgttaggaacctaacccagct |
388 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
28072018 |
atttggagtgcgttaatagcgtgagttgaactcaaatctgtta--tagcaacgtaaaaatatattctattgataggttcctaacagaacctaacccagct |
28071921 |
T |
|
| Q |
389 |
aaattcatttctaatcttaactaaaaagtaactcaaatttagaaaaactgccacttgtttatatactgaagccaacattctgaaactttacttttctacc |
488 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28071920 |
aaattcatttctaatcttaactaaaaagtaactcaaatttagaaaaactgccacttgtttatatactgaagccaacattctgaaactttacttttctacc |
28071821 |
T |
|
| Q |
489 |
aaaccttcttccagccgccagttctttcatatagtcctgtcctagaggggacttgtggagaaacagcatctgaagcaccggccaagcgcagaaacacact |
588 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28071820 |
aaaccttcttccagccgccagttctttcatatagtcctgtcctagaggggacttgtggagaaacagcatctgaagcaccggccaagcgcagaaacacact |
28071721 |
T |
|
| Q |
589 |
agctcttttatacgttgcaccgtttttgctctgttgtctgacatctttaatgctttcatattgatattgcttattttctcttgacatgttattcaccaag |
688 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28071720 |
agctcttttatacattgcaccgtttttgctctgttgtctgacatctttaatgctttcatattgatattgcttattttctcttgacatgttattcaccaag |
28071621 |
T |
|
| Q |
689 |
tcctttccattggcatcattctgattcttcgaagcaacacccttcgaagaaaaatttaagcgagaaaaaacgctggttttttctttgggttcatc |
783 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
28071620 |
tcctttccattggcatcattctgattcttcgaagcaacacccttcgaagaaaaatttaagcgagaaaacacgctggttttttctttgggttcatc |
28071526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 200; Significance: 1e-108; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-108
Query Start/End: Original strand, 463 - 783
Target Start/End: Original strand, 26415620 - 26415946
Alignment:
| Q |
463 |
acattctgaaactttacttttctaccaaaccttcttccagccgccagttctttcatatagtcctgtcctagaggggacttgtggagaaacagcatctgaa |
562 |
Q |
| |
|
||||||||||| | ||||||||||||||||||||||| ||||||||||||| |||||||||||||| |||||||||| ||||||||||||||||||||| |
|
|
| T |
26415620 |
acattctgaaaatatacttttctaccaaaccttcttcaggccgccagttcttacatatagtcctgtcatagaggggacctgtggagaaacagcatctgaa |
26415719 |
T |
|
| Q |
563 |
gcaccggccaagcgcagaaacacactagctcttttatacgttgcaccgtttttgctctgttgtctgacatctttaatgctttcatattgatattgcttat |
662 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||| ||| |||| ||||||||| || ||||||||||||||||||||||||||||||||| |
|
|
| T |
26415720 |
gcaccggttaagcgcagaaacacactagctcttttatacgttgtaccattttccctctgttgtgtggcatctttaatgctttcatattgatattgcttat |
26415819 |
T |
|
| Q |
663 |
tttctcttgacatg------ttattcaccaagtcctttccattggcatcattctgattcttcgaagcaacacccttcgaagaaaaatttaagcgagaaaa |
756 |
Q |
| |
|
||| |||||||||| ||||||||||||||||||| |||||| |||||||||||||||||||||| ||||||| |||||| | ||||||||||||| |
|
|
| T |
26415820 |
tttttcttgacatgttattcttattcaccaagtcctttctattggcgtcattctgattcttcgaagcaatacccttcaaagaaacacttaagcgagaaaa |
26415919 |
T |
|
| Q |
757 |
aacgctggttttttctttgggttcatc |
783 |
Q |
| |
|
|| |||||||||| |||||| ||||| |
|
|
| T |
26415920 |
cacactggttttttgtttgggctcatc |
26415946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 277 - 345
Target Start/End: Original strand, 26415265 - 26415333
Alignment:
| Q |
277 |
gatggcatgaaaatttggagtgcgttaatagcgtgagttgaactcaaatctgttaagtagcaacgtaaa |
345 |
Q |
| |
|
||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
26415265 |
gatggcatgaaaatttggagtgcattaatagagtgagttgaactcaaatctgttaagtagcaaggtaaa |
26415333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 102 - 260
Target Start/End: Original strand, 26415044 - 26415220
Alignment:
| Q |
102 |
gttgcttctgagggttcgttgctggcggtgagagataccatgtcgttgaagaacaaatatggcctaaaaaa----------------tgtgcccccaaa- |
184 |
Q |
| |
|
||||||||||| |||||||||||||| ||||||||| ||||| | |||||||||||||||||| | || || |||||||||||| |
|
|
| T |
26415044 |
gttgcttctgatggttcgttgctggcagtgagagatgccatgccattgaagaacaaatatggcttcaacaacagaccggcacatgtatgtgcccccaaaa |
26415143 |
T |
|
| Q |
185 |
tcatttggaggggcaaatgaagcaatgtgacagaagcaaaccagttgcagacaata-aaacttagcacaccacacca |
260 |
Q |
| |
|
|| ||||||| ||||||| |||||||||||||||| |||||||||||||||||||| ||||||||| |||||||||| |
|
|
| T |
26415144 |
tcctttggagtggcaaataaagcaatgtgacagaaacaaaccagttgcagacaatagaaacttagcccaccacacca |
26415220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 341 - 468
Target Start/End: Original strand, 26415454 - 26415569
Alignment:
| Q |
341 |
gtaaacatatattctattgataggttctgttaggaacctaacccagctaaattcatttctaatcttaactaaaaagtaactcaaatttagaaaaactgcc |
440 |
Q |
| |
|
|||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| ||||||||| |||||| | |||||| |
|
|
| T |
26415454 |
gtaaacatatattccattgataggttcctaacagaacctaacccagctaaattcatttctaat---------aaagtaactgaaattt---ataactgct |
26415541 |
T |
|
| Q |
441 |
acttgtttatatactgaagccaacattc |
468 |
Q |
| |
|
|||||||||||||||||||||| ||||| |
|
|
| T |
26415542 |
acttgtttatatactgaagccagcattc |
26415569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1029 times since January 2019
Visitors: 2388