View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0214_low_100 (Length: 313)
Name: NF0214_low_100
Description: NF0214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0214_low_100 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 185; Significance: 1e-100; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 53 - 284
Target Start/End: Complemental strand, 10507264 - 10507032
Alignment:
| Q |
53 |
ttctttcttaggtagacacnnnnnnnnaatcttgacacattaatttgtttatgatctaattttgtttggggtcttccaaagacttcactttggaaatcaa |
152 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10507264 |
ttctttcttaggtagacacttttttttaatcttgacacattaatttgtttatgatctaattttgtttggggtcttccaaagacttcactttggaaatcaa |
10507165 |
T |
|
| Q |
153 |
attca-ttgtagcattcttagtataatgatgactatagtggtccatgacactttgcaaagaatttggatctggtcaaatcttatgtcataaaaaataaaa |
251 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |||||||||||||||||||||||| ||||||| |
|
|
| T |
10507164 |
attcacttgtagcattcttagtataatgatgactatagcggtccatgacactttgcaaaaaatttgggtctggtcaaatcttatgtcataaataataaaa |
10507065 |
T |
|
| Q |
252 |
gagcaatcattgtcatataagtctacttagaat |
284 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
10507064 |
gagcaatcattgtcatataagtctacttagaat |
10507032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 80 - 284
Target Start/End: Complemental strand, 10488607 - 10488402
Alignment:
| Q |
80 |
aatcttgacacattaatttgtttatgatctaattttgtttggggtcttccaaagacttcactttggaaatcaaattca-ttgtagcattctt--agtata |
176 |
Q |
| |
|
||||||||| ||| ||| || ||||||| |||||| ||||||| || |||| ||||||||||||||||| |||||| ||||| |||||| || | | |
|
|
| T |
10488607 |
aatcttgactcatcaatatgattatgatttaatttagtttggg-tcatccagagacttcactttggaaactgaattcacttgtatgattcttttaggaga |
10488509 |
T |
|
| Q |
177 |
atgatgacta-tagtggtccatgacactttgcaaagaatttggatctggtcaaatcttatgtca--taaaaaataaaagagcaatcattgtcatataagt |
273 |
Q |
| |
|
|||||||||| ||||||||||||||||| || ||||||| |||||||||||||||||||| |||| |||||||||| |||||||||||||||| | |
|
|
| T |
10488508 |
atgatgactactagtggtccatgacactg----aaaaatttgggtctggtcaaatcttatgtcaaataaataataaaagagtaatcattgtcatataaat |
10488413 |
T |
|
| Q |
274 |
ctacttagaat |
284 |
Q |
| |
|
||||||||||| |
|
|
| T |
10488412 |
ctacttagaat |
10488402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 134 - 284
Target Start/End: Complemental strand, 10474013 - 10473859
Alignment:
| Q |
134 |
acttcactttggaaatcaaattca-ttgtagcattcttagtataatgatgacta-tagtggtccatgacactttgcaaagaatttggatctggtcaaatc |
231 |
Q |
| |
|
|||||||||||||||| |||||| ||||||||||||||||| |||||| ||| ||||||| ||||||||| | || | | | ||| |||||||||||| |
|
|
| T |
10474013 |
acttcactttggaaattgaattcacttgtagcattcttagtaggatgatggctactagtggtacatgacactatacataaattctgggtctggtcaaatc |
10473914 |
T |
|
| Q |
232 |
ttatgtcataaaa--aataaaagagcaatcattgtcatataagtctacttagaat |
284 |
Q |
| |
|
|||||||||| || ||||||||| |||||||| |||||||| |||||||||||| |
|
|
| T |
10473913 |
ttatgtcatataattaataaaagaccaatcattctcatataaatctacttagaat |
10473859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 196 - 284
Target Start/End: Complemental strand, 10544958 - 10544868
Alignment:
| Q |
196 |
atgacactttgcaaagaatttggatctggtcaaatcttatgtca--taaaaaataaaagagcaatcattgtcatataagtctacttagaat |
284 |
Q |
| |
|
|||||||| |||||| ||||||| |||||| |||||||||||| || | ||||||||||||||| ||||||||||| |||||||||||| |
|
|
| T |
10544958 |
atgacactatgcaaaaaatttgggcctggtctaatcttatgtcacatatataataaaagagcaatctttgtcatataaatctacttagaat |
10544868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 81 - 284
Target Start/End: Complemental strand, 10463527 - 10463332
Alignment:
| Q |
81 |
atcttgacacattaatttgtttatgatctaattttgtttggggtcttccaaagacttcactttggaaatcaaattca-ttgtagcattcttagtataatg |
179 |
Q |
| |
|
|||||||| ||||||| || | ||||||||||| ||||||| ||||||| ||||| | |||||||||| |||||| |||| || |||||||||| ||| |
|
|
| T |
10463527 |
atcttgactcattaatatgatattgatctaatttagtttggg-tcttccagagactgcgctttggaaattgaattcacttgttgcgttcttagtatgatg |
10463429 |
T |
|
| Q |
180 |
atgactatagtggtccatgacactttgcaaagaatttggatctggtcaaatcttatgtc--ataaaaaataaaagagcaatcattgtcatataagtctac |
277 |
Q |
| |
|
||| ||| | | ||| |||||| | |||||| ||||||||||||| ||| ||||| |||||||||| || ||||||||||||| ||||| |
|
|
| T |
10463428 |
atg----------tccttcatactatgcaaaaattttggagctggtcaaatcttttgttttataaataataaaagagtaaccattgtcatataaatctac |
10463339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 122 - 284
Target Start/End: Original strand, 33575529 - 33575690
Alignment:
| Q |
122 |
ggtcttccaaagacttcactttggaaatcaaattcat-tgtagcattcttagtataatgatgacta-tagtggtccatgacactttgcaaagaatttgga |
219 |
Q |
| |
|
||||||||| ||| ||| ||||||||||| |||||| |||||||||||||||| |||||| ||| ||||||| ||||| ||| | | ||||| |
|
|
| T |
33575529 |
ggtcttccagagatttcgctttggaaatcgaattcacctgtagcattcttagtacgatgatggctactagtggt-----acactaagcacaaattttggg |
33575623 |
T |
|
| Q |
220 |
tctggtcaaatcttatgtcataaaa--aataaaagagcaatcattgtcatataagtctacttagaat |
284 |
Q |
| |
|
|||| ||||||||||||||||| || |||| |||||||||||| |||||||| |||||||||||| |
|
|
| T |
33575624 |
tctgatcaaatcttatgtcatataattaatagaagagcaatcatactcatataaatctacttagaat |
33575690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1321 times since January 2019
Visitors: 2391