View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0214_low_102 (Length: 311)
Name: NF0214_low_102
Description: NF0214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0214_low_102 |
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Alignment Details
Target: chr5 (Bit Score: 156; Significance: 7e-83; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 71 - 250
Target Start/End: Original strand, 35975274 - 35975453
Alignment:
| Q |
71 |
gactagacacagttgttgtctcagatgttgcaggcattgttgccagtgaagaagaacgactagcagcagccgatgaagaatccatcaaatattccttaat |
170 |
Q |
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| T |
35975274 |
gactagacgcagttgttttctcagatgttgcaggcattgttgccagtgaagaagaacgactagcagcagccgatgaagaatccatcaaatattccttaac |
35975373 |
T |
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| Q |
171 |
agagctataatctgagatatcgggcaagttaagtcgcgcagaagtaccatacatagttctagcagcataatcataagcaa |
250 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |||||||||||| |
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| T |
35975374 |
agagctataatctgagatatcgggcaagttaagtcgtgcagaagtaccatacatagctctagcagcagaatcataagcaa |
35975453 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 71 - 250
Target Start/End: Original strand, 35978299 - 35978478
Alignment:
| Q |
71 |
gactagacacagttgttgtctcagatgttgcaggcattgttgccagtgaagaagaacgactagcagcagccgatgaagaatccatcaaatattccttaat |
170 |
Q |
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|||||||||||||||||||||||||||| |||||| ||||||||| |||||| ||| |||||||| || | |||||||||| |||||||||||| ||| |
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| T |
35978299 |
gactagacacagttgttgtctcagatgtcgcaggcgttgttgccaccgaagaacaacagctagcagctgctgctgaagaatccttcaaatattcctgaat |
35978398 |
T |
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| Q |
171 |
agagctataatctgagatatcgggcaagttaagtcgcgcagaagtaccatacatagttctagcagcataatcataagcaa |
250 |
Q |
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||| ||||||||||||||||| || ||||||||||||||||||| ||||||||| | ||||||||||||||||||||||| |
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| T |
35978399 |
agatctataatctgagatatcaggaaagttaagtcgcgcagaaggaccatacatggctctagcagcataatcataagcaa |
35978478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 71 - 250
Target Start/End: Complemental strand, 35971336 - 35971158
Alignment:
| Q |
71 |
gactagacacagttgttgtctcagatgttgcaggcattgttgccagtgaagaagaacgactagcagcagccgatgaagaatccatcaaatattccttaat |
170 |
Q |
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|||||||||||| ||||||||||||| || |||| ||||| | | |||||| | | |||| || |||| ||||||||||| |||||||||||||||| |
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| T |
35971336 |
gactagacacagctgttgtctcagattttacaggagttgttactaccgaagaacagcagctagtagaagccaatgaagaatccttcaaatattccttaat |
35971237 |
T |
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| Q |
171 |
agagctataatctgagatatcgggcaagttaagtcgcgcagaagtaccatacatagttctagcagcataatcataagcaa |
250 |
Q |
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|| |||||||||| | ||||||| ||||||||||||||||||| ||||||||| ||| ||||||||||||||||||| |
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| T |
35971236 |
-gaactataatctgcggtatcggggaagttaagtcgcgcagaaggaccatacatgactctggcagcataatcataagcaa |
35971158 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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