View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
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Query
Query hiting target
Query hiting target's complemental strand
Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0214_low_104 (Length: 307)
Name: NF0214_low_104
Description: NF0214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0214_low_104
Alignment Details
Target: chr5 (Bit Score: 144; Significance: 1e-75; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 30 - 303
Target Start/End: Original strand, 40743659 - 40743934
Alignment:
Q
30
ttagaagcatctcttatgggtaaattactcttaaatatttccttatttttctttcaatacttgcatttataaaaatcactttttaaaaagaaagaaatag
129
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
40743659
ttagaagcatctcttatgggtaaattactcttaaatatttccttatttttctttcaatacttgcatttataaaaatcactttttaaaaagaaagaaatag
40743758
T
Q
130
at--tnnnnnnnnnnnnntcttcaggagaagctactcaaaacaacttcttatttgatagtacaatttttaaatgnnnnnnnctttcagattcttatnnnn
227
Q
|| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
T
40743759
ataaaaaaaaaaaaaaaatcttcaagagaagctactcaaaacaacttcttatttgatagtacaatttttaaatttttttttctttcagattcttataaaa
40743858
T
Q
228
nnnnnnnnnnntttataacaaatagatgaaaactcctaaaaaggacatattcatggttggacaattcatctcactc
303
Q
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
T
40743859
aaaataaaaaatttataacaaatagatgaaaactcctaaaaaggacatattcatggttggacaattcatttcactc
40743934
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 30 - 131
Target Start/End: Original strand, 40756175 - 40756276
Alignment:
Q
30
ttagaagcatctcttatgggtaaattactcttaaatatttccttatttttctttcaatacttgcatttataaaaatcactttttaaaaagaaagaaatag
129
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
40756175
ttagaagcatctcttatgggtaaattactcttaaatatttccttatttttctttcaatacttgcatttataaaaatcactttttaaaaagaaagaaatag
40756274
T
Q
130
at
131
Q
||
T
40756275
at
40756276
T
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 146 - 185
Target Start/End: Original strand, 40756294 - 40756333
Alignment:
Q
146
tcttcaggagaagctactcaaaacaacttcttatttgata
185
Q
|||||| |||||||||||||| ||||||||||||||||||
T
40756294
tcttcaagagaagctactcaacacaacttcttatttgata
40756333
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
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