View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0214_low_114 (Length: 294)
Name: NF0214_low_114
Description: NF0214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0214_low_114 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 118; Significance: 3e-60; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 30 - 147
Target Start/End: Original strand, 39828697 - 39828814
Alignment:
| Q |
30 |
caatgcaggactacaactcccaatataataataatacattaatttatctaaacattctctaataattcctgcctaccccctcagaatgcagtgcttatgt |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39828697 |
caatgcaggactacaactcccaatataataataatacattaatttatctaaacattctctaataattcctgcctaccccctcagaatgcagtgcttatgt |
39828796 |
T |
|
| Q |
130 |
catgtgtatgagattttg |
147 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
39828797 |
catgtgtatgagattttg |
39828814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 223 - 282
Target Start/End: Original strand, 39828889 - 39828949
Alignment:
| Q |
223 |
gactatcctcccg-cactaggtgtactagagaattaataaaaattgttgtattgaagtctc |
282 |
Q |
| |
|
||||||||||||| || |||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
39828889 |
gactatcctcccggcattaggtgtactagagaattaataaaaattgttgtattaaagtctc |
39828949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1159 times since January 2019
Visitors: 2389