View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0214_low_115 (Length: 294)
Name: NF0214_low_115
Description: NF0214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0214_low_115 |
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Alignment Details
Target: chr6 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 30 - 281
Target Start/End: Original strand, 10782889 - 10783140
Alignment:
| Q |
30 |
gaaacaatattggccatatagaaaccaactcattgcatttgcatcccataacacaaactaaatattgattttgtgacacaatttaaccataacttcttgg |
129 |
Q |
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| T |
10782889 |
gaaacaatattggacatatagaaaccaactcattgcatttgcatcccataacacaaactaaatattgattttgtgacacaatttaaccataacttcttgg |
10782988 |
T |
|
| Q |
130 |
agtacaatttgacatcaaataatgaatttaataaattccgttagtgcaagatatacaaaaaatgtgtatctactattgaatgcttaaaaatattttcaaa |
229 |
Q |
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| T |
10782989 |
agtacagtttgacatcaaataatgaatttaataaattccgttagtgcaagatatacaaaaaatgggtatctactattgaatgcttaaaaatattttcaaa |
10783088 |
T |
|
| Q |
230 |
acacatcaattaaaatatttttagaatgaaaacaacatagatttacctcttc |
281 |
Q |
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| T |
10783089 |
acacatcaattaaaatatttttagaatgaaaacaacatagatttacctcttc |
10783140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 281
Target Start/End: Original strand, 10782628 - 10782664
Alignment:
| Q |
245 |
tatttttagaatgaaaacaacatagatttacctcttc |
281 |
Q |
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| T |
10782628 |
tatttttagaataaaaacaaaatagatttacctcttc |
10782664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 112 - 281
Target Start/End: Original strand, 23438705 - 23438879
Alignment:
| Q |
112 |
ttaaccataacttcttggagtacaatttgacatcaaataatg-----aatttaataaattccgttagtgcaagatatacaaaaaatgtgtatctactatt |
206 |
Q |
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| T |
23438705 |
ttaacaatgacttcttggaatacaatttgatatcaaatattgcttctaatgtaatcaattccgttagtgcaagatatacaaaaaatgtatatctactaat |
23438804 |
T |
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| Q |
207 |
gaatgcttaaaaatattttcaaaacacatcaattaaaatatttttagaatgaaaacaacatagatttacctcttc |
281 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
23438805 |
gaatgcttaaaaatattttcaaaacacatcaattaaaatatttttagaatgaaaacaaaatagatttacctcttc |
23438879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 125 - 281
Target Start/End: Complemental strand, 23438665 - 23438504
Alignment:
| Q |
125 |
cttggagtacaatttgacatcaaataatg-----aatttaataaattccgttagtgcaagatatacaaaaaatgtgtatctactattgaatgcttaaaaa |
219 |
Q |
| |
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| T |
23438665 |
cttggaatacaatttgatatcaaatattgcttctaatgtaatcaattccgttagcgcaagatatacaaaaaatgtgtatctactattgaatgcttaaaaa |
23438566 |
T |
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| Q |
220 |
tattttcaaaacacatcaattaaaatatttttagaatgaaaacaacatagatttacctcttc |
281 |
Q |
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|
| T |
23438565 |
tattttccaaagacatcaattaaaatatttttataatgaaagcaaaatagatttacctcttc |
23438504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 109; Significance: 7e-55; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 133 - 281
Target Start/End: Complemental strand, 8674160 - 8674012
Alignment:
| Q |
133 |
acaatttgacatcaaataatgaatttaataaattccgttagtgcaagatatacaaaaaatgtgtatctactattgaatgcttaaaaatattttcaaaaca |
232 |
Q |
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||||||| | |||||||| ||||| |||| ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8674160 |
acaatttaatatcaaatattgaatgtaatcaattccgttagcacaagatatataaaaaatgtgtatctactattgaatgcttaaaaatattttcaaaaca |
8674061 |
T |
|
| Q |
233 |
catcaattaaaatatttttagaatgaaaacaacatagatttacctcttc |
281 |
Q |
| |
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||||||||||||||||||||||| |||||||| |||||||||||||||| |
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| T |
8674060 |
catcaattaaaatatttttagaacgaaaacaaaatagatttacctcttc |
8674012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 192 - 281
Target Start/End: Original strand, 8674158 - 8674244
Alignment:
| Q |
192 |
tgtgtatctactattgaatgcttaaaaatattttcaaaacaca--tcaattaaaatatttttagaatgaaaacaacatagatttacctcttc |
281 |
Q |
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|||||||||||||||||||||||| ||||||||||||||| ||||| ||| ||||| |||||||||||||| |||||||||||||||| |
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| T |
8674158 |
tgtgtatctactattgaatgctta----tattttcaaaacacacatcaat-aaactatttctagaatgaaaacaaaatagatttacctcttc |
8674244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 68; Significance: 2e-30; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 30 - 105
Target Start/End: Complemental strand, 50508945 - 50508870
Alignment:
| Q |
30 |
gaaacaatattggccatatagaaaccaactcattgcatttgcatcccataacacaaactaaatattgattttgtga |
105 |
Q |
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||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50508945 |
gaaacaatattggacatatacaaaccaactcattgcatttgcatcccataacacaaactaaatattgattttgtga |
50508870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 237 - 278
Target Start/End: Complemental strand, 50508350 - 50508309
Alignment:
| Q |
237 |
aattaaaatatttttagaatgaaaacaacatagatttacctc |
278 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||| |
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| T |
50508350 |
aattaaaatatttttagaatgaaaacaaaatagatttacctc |
50508309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 281
Target Start/End: Complemental strand, 50509248 - 50509177
Alignment:
| Q |
213 |
ttaaaaatattttcaaaacac---atcaattaaaatatttttagaatgaaaacaacatagatttacctcttc |
281 |
Q |
| |
|
||||||| |||||||||| || || |||| || |||||||||||| ||||||| |||||||||||||||| |
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| T |
50509248 |
ttaaaaacattttcaaaatactatatgaattgaattatttttagaataaaaacaaaatagatttacctcttc |
50509177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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