View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0214_low_116 (Length: 293)
Name: NF0214_low_116
Description: NF0214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0214_low_116 |
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Alignment Details
Target: chr8 (Bit Score: 143; Significance: 4e-75; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 55 - 237
Target Start/End: Original strand, 31225305 - 31225487
Alignment:
| Q |
55 |
gaatatacgatctcatcaaagaaaaatatcgataataattacagtcgaaataattnnnnnnntaaaatagaatttaatttctgactctaaaattagttgc |
154 |
Q |
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| T |
31225305 |
gaatatacggtctcatcaaagaaaaatatcgataataattacagtcgaaataatttaaaaaataaaatagaatttaatttctgactctaaaat-agttgc |
31225403 |
T |
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| Q |
155 |
acagaa-tatacggttaaagaggagtattgaaaatgatatgcctacgttttttccttcacacaaatgtctcattccattgaggt |
237 |
Q |
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| T |
31225404 |
acagaaatatacggttaaagaggagtattgaaaatgatatgcctacgttttttccttcacacaaatgtctcattccattgaggt |
31225487 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 55 - 240
Target Start/End: Complemental strand, 31225804 - 31225619
Alignment:
| Q |
55 |
gaatatacgatctcatcaaagaaaaatatcgataataattacagtcgaaataattnnnnnnnt-aaaatagaatttaatttctgactctaaaattagttg |
153 |
Q |
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||||||||| |||| |||||||||||||||||||||||||| ||||||||||||| | ||||||||||| |||||| |||||||||||||||| |
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| T |
31225804 |
gaatatacggtctcgtcaaagaaaaatatcgataataattagagtcgaaataatttaaaaaattaaaatagaattcaatttccaactctaaaattagttg |
31225705 |
T |
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| Q |
154 |
cacagaa-tatacggttaaagaggagtattgaaaatgatatgcctacgttttttccttcacacaaatgtctcattccattgaggtctt |
240 |
Q |
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| T |
31225704 |
catagaaatatacggttaaagaggagtattgagaatgatatgcctatgttttttcctt--cacaaatgtcttattccattgaggtctt |
31225619 |
T |
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