View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0214_low_124 (Length: 278)

Name: NF0214_low_124
Description: NF0214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0214_low_124
NF0214_low_124
[»] chr4 (2 HSPs)
chr4 (44-217)||(34318137-34318312)
chr4 (139-192)||(2071342-2071395)
[»] chr1 (1 HSPs)
chr1 (44-197)||(33576076-33576229)
[»] chr7 (3 HSPs)
chr7 (45-190)||(33821709-33821857)
chr7 (45-197)||(7319501-7319653)
chr7 (113-197)||(23898078-23898162)
[»] scaffold0027 (1 HSPs)
scaffold0027 (109-196)||(150444-150531)
[»] chr6 (1 HSPs)
chr6 (138-186)||(31706580-31706628)


Alignment Details
Target: chr4 (Bit Score: 145; Significance: 2e-76; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 44 - 217
Target Start/End: Complemental strand, 34318312 - 34318137
Alignment:
Q  44 gaatcaacggttcatttgttccttcattgggaagtttttggtttcgtatggcagctcatcaagttttggattgacatcacaggagtcgagcccaacaata 143  Q
    ||||||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||    
T  34318312 gaatcaacggttcatttgttccttcattgtgaagtttttggttccgtatggcaactcatcaagttttggattgacatcaaaggagtcgagcccaacaata 34318213  T
Q  144 ttagtgaccacttttttcagtttattcattatacaagtcattcgaagaagcgtc--ttgtttcttaagcttttatg 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||| |||||||    
T  34318212 ttagtgaccacttttttcagtttattcattatacaagtcattcgaagaagcgtcgattgtttcttaagtttttatg 34318137  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 139 - 192
Target Start/End: Complemental strand, 2071395 - 2071342
Alignment:
Q  139 caatattagtgaccacttttttcagtttattcattatacaagtcattcgaagaa 192  Q
    ||||||||||||| | ||| ||||||||||||||| || | |||||||||||||    
T  2071395 caatattagtgactattttattcagtttattcattgtagaggtcattcgaagaa 2071342  T

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Target: chr1 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 44 - 197
Target Start/End: Complemental strand, 33576229 - 33576076
Alignment:
Q  44 gaatcaacggttcatttgttccttcattgggaagtttttggtttcgtatggcagctcatcaagttttggattgacatcacaggagtcgagcccaacaata 143  Q
    |||||| |||||||||||||||||||||  || ||||| || | | | |||||||| ||||||| |||||||| ||||| |||||| || ||||||||||    
T  33576229 gaatcagcggttcatttgttccttcattctgatgttttcgggtccttgtggcagctaatcaagtcttggattggcatcataggagttgaccccaacaata 33576130  T
Q  144 ttagtgaccacttttttcagtttattcattatacaagtcattcgaagaagcgtc 197  Q
    ||||||| |||||||||||||||||||||| | || |||| |||||||||||||    
T  33576129 ttagtgatcacttttttcagtttattcattgttcaggtcactcgaagaagcgtc 33576076  T

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Target: chr7 (Bit Score: 71; Significance: 3e-32; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 45 - 190
Target Start/End: Original strand, 33821709 - 33821857
Alignment:
Q  45 aatcaacggttcatttgttccttcattgggaagtttttggtttcgtatggcagctcatcaagttttggattgacatcacaggagtcgagcccaacaatat 144  Q
    |||||||||||||||||||||||||||| || |||||||| | | | |||||||| |||| || ||||||||||||||| ||||| || ||||| |||||    
T  33821709 aatcaacggttcatttgttccttcattgtgatgtttttgggtccttgtggcagctaatcaggtcttggattgacatcactggagtagaccccaataatat 33821808  T
Q  145 ---tagtgaccacttttttcagtttattcattatacaagtcattcgaag 190  Q
       |||||| ||||||||||||||||||||||||||| |||| ||||||    
T  33821809 tagtagtgatcacttttttcagtttattcattatacaggtcactcgaag 33821857  T

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Target: chr7; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 45 - 197
Target Start/End: Original strand, 7319501 - 7319653
Alignment:
Q  45 aatcaacggttcatttgttccttcattgggaagtttttggtttcgtatggcagctcatcaagttttggattgacatcacaggagtcgagcccaacaatat 144  Q
    ||||||||||||||||||||||||  || ||  |||| || | | | ||||||||  ||||||  ||||||| | | ||||||||||| ||||| |||||    
T  7319501 aatcaacggttcatttgttccttcgctgtgatattttcgggtccttgtggcagctagtcaagtcatggattggccttacaggagtcgaccccaataatat 7319600  T
Q  145 tagtgaccacttttttcagtttattcattatacaagtcattcgaagaagcgtc 197  Q
    |||||| ||||||||||| ||||||||||||||| | || |||||||||||||    
T  7319601 tagtgatcacttttttcaatttattcattatacaggccactcgaagaagcgtc 7319653  T

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Target: chr7; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 113 - 197
Target Start/End: Complemental strand, 23898162 - 23898078
Alignment:
Q  113 attgacatcacaggagtcgagcccaacaatattagtgaccacttttttcagtttattcattatacaagtcattcgaagaagcgtc 197  Q
    |||| ||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||| |||| |||| |||||||||||||    
T  23898162 attggcatcacaggagtcgaccccaataatattagtgatcacttttttcagtttattcattgtacaggtcactcgaagaagcgtc 23898078  T

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Target: scaffold0027 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 109 - 196
Target Start/End: Complemental strand, 150531 - 150444
Alignment:
Q  109 ttggattgacatcacaggagtcgagcccaacaatattagtgaccacttttttcagtttattcattatacaagtcattcgaagaagcgt 196  Q
    |||||||| ||||||||||||||| ||||| ||||||||||| ||||||||||| |||||||||| |||| |||| ||||||||||||    
T  150531 ttggattggcatcacaggagtcgaccccaataatattagtgatcacttttttcaatttattcattgtacaggtcactcgaagaagcgt 150444  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 138 - 186
Target Start/End: Complemental strand, 31706628 - 31706580
Alignment:
Q  138 acaatattagtgaccacttttttcagtttattcattatacaagtcattc 186  Q
    |||||||||||||||| || ||||| ||||||||||| ||| |||||||    
T  31706628 acaatattagtgaccatttctttcaatttattcattacacaggtcattc 31706580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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