View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0214_low_125 (Length: 272)
Name: NF0214_low_125
Description: NF0214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0214_low_125 |
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Alignment Details
Target: chr4 (Bit Score: 130; Significance: 2e-67; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 102 - 243
Target Start/End: Original strand, 47304318 - 47304459
Alignment:
| Q |
102 |
taaagcaacattcgttttgaaatggagaaaatattattttcttctccatcttcctatatctataaggatggattattttaatttcaatcttcattaccaa |
201 |
Q |
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| T |
47304318 |
taaagcgatattcgttttgaaatggagaaaatattattttcttctccatcttcctatatctataaggatggattattttaatttcaatcttcattaccaa |
47304417 |
T |
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| Q |
202 |
taaaacttttgagatcttaaaactcaattctttagagatatt |
243 |
Q |
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| T |
47304418 |
taaaacttttgagttcttaaaactcaattctttagagatatt |
47304459 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 113 - 225
Target Start/End: Original strand, 47283093 - 47283206
Alignment:
| Q |
113 |
tcgttttgaaatggagaaaa-tattattttcttctccatcttcctatatctataaggatggattattttaatttcaatcttcattaccaataaaactttt |
211 |
Q |
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| T |
47283093 |
tcgttttgaaatggagaaatgtgttattttcttcttcatctccttgtatctataaggatggaatattttaatttcaatcttcattaccaataaaccgttt |
47283192 |
T |
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| Q |
212 |
gagatcttaaaact |
225 |
Q |
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||| || ||||||| |
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| T |
47283193 |
gagttcctaaaact |
47283206 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 154 - 243
Target Start/End: Original strand, 47284135 - 47284224
Alignment:
| Q |
154 |
cctatatctataaggatggattattttaatttcaatcttcattaccaataaaacttttgagatcttaaaactcaattctttagagatatt |
243 |
Q |
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| T |
47284135 |
cctatatttttaaggatggattatttcaatttcaatcttcatccccaatacaccatttgggttcataaaactcaattgtttagatatatt |
47284224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 212
Target Start/End: Original strand, 47305788 - 47305836
Alignment:
| Q |
164 |
taaggatggattattttaatttcaatcttcattaccaataaaacttttg |
212 |
Q |
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| T |
47305788 |
taaggatgtattattttaatttcaatcttcatttccaatacaccttttg |
47305836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 32 - 75
Target Start/End: Original strand, 30354541 - 30354584
Alignment:
| Q |
32 |
cgccattataccttttaaaacaaacaaacaaaattttggagaaa |
75 |
Q |
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| T |
30354541 |
cgccattatactttttagaacaaacaaacacaattttggagaaa |
30354584 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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