View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0214_low_128 (Length: 269)
Name: NF0214_low_128
Description: NF0214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0214_low_128 |
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Alignment Details
Target: chr2 (Bit Score: 156; Significance: 6e-83; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 48 - 242
Target Start/End: Complemental strand, 22971484 - 22971296
Alignment:
| Q |
48 |
gtcttcatgcgttctcacaaatctgacaaaactaaacttatgccaagttggtcaactcaaataagccaatccaaacatgcgttctcacaattcttgagta |
147 |
Q |
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| T |
22971484 |
gtcttcatgcgttctcacaaatctgacaaaactaaacttatgccaagttggtcaactcaaataagccaatccaaacatgtg------caattcttgagta |
22971391 |
T |
|
| Q |
148 |
tgataatctttaacgaaacaaaagcatagaacagaaaatgaatcaagcacctgttcctgaaggagtgacgggaacaccaagactctctgtgctgc |
242 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| ||||| |
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| T |
22971390 |
tgataatctttaacgaaacaaaagcatagaacagaaaatgaatcaagcacctgttcctgaaggagtgacgggaacaccaagaatatctgcgctgc |
22971296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 48 - 242
Target Start/End: Original strand, 1131044 - 1131232
Alignment:
| Q |
48 |
gtcttcatgcgttctcacaaatctgacaaaactaaacttatgccaagttggtcaactcaaataagccaatccaaacatgcgttctcacaattcttgagta |
147 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
1131044 |
gtcttcatgcgttctcacaaatctgacaaaactaaacttattccaagttggtcaactcaaataagccaatccaaacatgcg------caattcttgagta |
1131137 |
T |
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| Q |
148 |
tgataatctttaacgaaacaaaagcatagaacagaaaatgaatcaagcacctgttcctgaaggagtgacgggaacaccaagactctctgtgctgc |
242 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| ||||| |
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| T |
1131138 |
tgataatctttaacgaagcaaaagcatagaacagaaaatgaatcaagcacctgttcctgaaggagtgacgggaacaccaagaatatctgcgctgc |
1131232 |
T |
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