View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0214_low_138 (Length: 266)
Name: NF0214_low_138
Description: NF0214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0214_low_138
Alignment Details
Target: chr8 (Bit Score: 193; Significance: 1e-105; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 45 - 237
Target Start/End: Original strand, 44306728 - 44306920
Alignment:
Q
45
tcttacacaaggtaagaatctgaatcttctcaccagtgttaacatttgtaataaaatcatccttcttaataacaccctgatagattcttagataagttaa
144
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
44306728
tcttacacaaggtaagaatctgaatcttctcaccagtgttaacatttgtaataaaatcatccttcttaataacaccctgatagattcttagataagttaa
44306827
T
Q
145
taagtcactcctgttaagattatttgtgaaagcctttgcaacaaatggcgcatcaatacttccagacaattcaattttctcaccattcttatt
237
Q
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
44306828
taagtcactcctgttaagattatttgtgaaagcctttgcaacaaatggcgcatcaatacttccagacaattcaattttctcaccattcttatt
44306920
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 60 - 237
Target Start/End: Original strand, 43896289 - 43896466
Alignment:
Q
60
gaatctgaatcttctcaccagtgttaacatttgtaataaaatcatccttcttaataacaccctgatagattcttagataagttaataagtcactcctgtt
159
Q
||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| || | |
T
43896289
gaatctgaatcttcttaccagtgttaacatttgtaataaaatcacccttcttaataacaccctgatagattcttagataagttactaatccatcattcct
43896388
T
Q
160
aagattatttgtgaaagcctttgcaacaaatggcgcatcaatacttccagacaattcaattttctcaccattcttatt
237
Q
|| |||||||||| ||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| ||||
T
43896389
aatcacatttgtgaaaacctttgcaacaaatggcgcatcaatgcttccagacaattcaactttctcaccattcctatt
43896466
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 60 - 237
Target Start/End: Original strand, 44312522 - 44312699
Alignment:
Q
60
gaatctgaatcttctcaccagtgttaacatttgtaataaaatcatccttcttaataacaccctgatagattcttagataagttaataagtcactcctgtt
159
Q
|||||| |||||||| |||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || | |
T
44312522
gaatcttaatcttcttaccagtgttaacgtttgtaataaaatcacccttcttaataacaccctgatagattcttagataagttaataagtacctaatcct
44312621
T
Q
160
aagattatttgtgaaagcctttgcaacaaatggcgcatcaatacttccagacaattcaattttctcaccattcttatt
237
Q
| ||||||||||| ||||||| ||||||||| |||||| ||||||||||||||||| ||||||||||||||||||
T
44312622
atacatatttgtgaaaacctttgctacaaatggctcatcaacacttccagacaattcaactttctcaccattcttatt
44312699
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 61 - 237
Target Start/End: Original strand, 44301636 - 44301814
Alignment:
Q
61
aatctgaatcttctcaccagtgttaacatttgtaataaaatcatccttcttaataacaccctgatagattcttagataagttaataag------tcactc
154
Q
||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| ||||||| ||| ||||||
T
44301636
aatctgaatcttctcaccagtgttaacatttgtaataaaatcacccttcttgataacaccctgatagattcttagacaagttaa-aagaatccatcactc
44301734
T
Q
155
ctgttaagattatttgtgaaagcctttgcaacaaatggcgcatcaatacttccagacaattcaattttctcaccattcttatt
237
Q
| | | |||||||||| ||||||| |||||||||||||||| ||||||||||||||||| ||||||||||||||||||
T
44301735
caataca---aatttgtgaaaacctttgctacaaatggcgcatcaacacttccagacaattcaactttctcaccattcttatt
44301814
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4 (Bit Score: 106; Significance: 4e-53; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 60 - 237
Target Start/End: Original strand, 18701897 - 18702074
Alignment:
Q
60
gaatctgaatcttctcaccagtgttaacatttgtaataaaatcatccttcttaataacaccctgatagattcttagataagttaataagtcactcctgtt
159
Q
||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | | ||| |
T
18701897
gaatctgaatcttcttaccagtgttaacatttgtaataaaatcacccttcttaataacaccctgatagattcttagataagttaatttgaaatacctctc
18701996
T
Q
160
aagattatttgtgaaagcctttgcaacaaatggcgcatcaatacttccagacaattcaattttctcaccattcttatt
237
Q
| | ||||| |||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||
T
18701997
atgccaatttgcaaaagcctttgcaacaaatggtgcatcaatacttccagacaattcaactttctcaccattcttatt
18702074
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr3 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 60 - 237
Target Start/End: Original strand, 4084407 - 4084584
Alignment:
Q
60
gaatctgaatcttctcaccagtgttaacatttgtaataaaatcatccttcttaataacaccctgatagattcttagataagttaataagtcactcctgtt
159
Q
|||||| |||||||| ||| |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| | | |
T
4084407
gaatcttaatcttcttaccggtgttaacatttgtaataaaatcacccttcttgataacaccctgatagattcttagataagttaattttaaaaacggcct
4084506
T
Q
160
aagattatttgtgaaagcctttgcaacaaatggcgcatcaatacttccagacaattcaattttctcaccattcttatt
237
Q
| | || ||||||||||||| |||||||||| ||||||||||||||| ||||||||| ||||||||||||| ||||
T
4084507
atgccaatatgtgaaagcctttccaacaaatggtgcatcaatacttccaaacaattcaactttctcaccattcctatt
4084584
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr6 (Bit Score: 72; Significance: 8e-33; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 60 - 237
Target Start/End: Complemental strand, 8159067 - 8158890
Alignment:
Q
60
gaatctgaatcttctcaccagtgttaacatttgtaataaaatcatccttcttaataacaccctgatagattcttagataagttaa---taagtcactcct
156
Q
|||||| |||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |||||||| ||| | ||||
T
8159067
gaatctcaatcttcttaccagtgttaacatttgtaataaaatcacccttcttaataacaccctgataaattcttaggtaagttaattttaaatacatcct
8158968
T
Q
157
gttaagattatttgtgaaagcctttgcaacaaatggcgcatcaatacttccagacaattcaattttctcaccattcttatt
237
Q
|| | | || ||||||||||||||||||||| ||||||||||||||||||||||||| |||||| |||||| ||||
T
8158967
-atacca--agttacgaaagcctttgcaacaaatggagcatcaatacttccagacaattcaactttctcgccattcctatt
8158890
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 67 - 145
Target Start/End: Complemental strand, 35856802 - 35856724
Alignment:
Q
67
aatcttctcaccagtgttaacatttgtaataaaatcatccttcttaataacaccctgatagattcttagataagttaat
145
Q
|||||||||||||||||||||||| ||||||||||| | || ||||||| |||||||||||||||||||| ||||||
T
35856802
aatcttctcaccagtgttaacattagtaataaaatccccttttctaataacgccctgatagattcttagatatgttaat
35856724
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 232
Target Start/End: Complemental strand, 35856703 - 35856641
Alignment:
Q
170
gtgaaagcctttgcaacaaatggcgcatcaatacttccagacaattcaattttctcaccattc
232
Q
||||||||| ||| ||||| ||| |||||||||||||||||||||| | |||||| ||||||
T
35856703
gtgaaagccaatgcgacaaacggcccatcaatacttccagacaattctactttctctccattc
35856641
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 77 - 133
Target Start/End: Original strand, 10541388 - 10541444
Alignment:
Q
77
ccagtgttaacatttgtaataaaatcatccttcttaataacaccctgatagattctt
133
Q
||||||||| |||||||||||||||| ||||| ||| ||||||| ||||||||||
T
10541388
ccagtgttatcatttgtaataaaatctcccttccgaatgacaccctcatagattctt
10541444
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
© Oklahoma State University
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