View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0214_low_145 (Length: 261)
Name: NF0214_low_145
Description: NF0214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0214_low_145
Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 39 - 241
Target Start/End: Complemental strand, 45280674 - 45280472
Alignment:
Q
39
aattatatccttccatgtacagtgtcactttctagtttccatttattgtttaatttttgttggagtttatatttgaaagacttcaccatgcagcgtacgt
138
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
T
45280674
aattatatccttccatgtacagtgtcactttctagtttccatttattgtttaatttttgttggagtttatatttgaaagtcttcaccatgcagcgtacgt
45280575
T
Q
139
cctgatttgttatgcagcgtacgttctgagatatctcctttaccatccaagatagtgacactctaagcctctaaagtgtttttaacaccatttttatatt
238
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
45280574
cctgatttgttatgcagcgtacgttctgagatatctcctttaccatccaagatagtgacactctaagcctctaaagtgtttttaacaccatttttatatt
45280475
T
Q
239
cat
241
Q
|||
T
45280474
cat
45280472
T
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Target Overview ] [
Alignment Overview ]
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