View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0214_low_149 (Length: 260)
Name: NF0214_low_149
Description: NF0214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0214_low_149 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 151; Significance: 5e-80; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 110 - 260
Target Start/End: Original strand, 31935186 - 31935336
Alignment:
| Q |
110 |
caaaggtgacaagaagagtaaaaataccaaagagtgaatattcttaaaaaatattccgcaataaaaataacaaccacgtcatattaatttttagcctaag |
209 |
Q |
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| T |
31935186 |
caaaggtgacaagaagagtaaaaataccaaagagtgaatattcttaaaaaatattccgcaataaaaataacaaccacgtcatattaatttttagcctaag |
31935285 |
T |
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| Q |
210 |
gataacaaccattaagactgcatcgaccaccttttgaattttgatagttgt |
260 |
Q |
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| T |
31935286 |
gataacaaccattaagactgcatcgaccaccttttgaattttgatagttgt |
31935336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 30 - 83
Target Start/End: Original strand, 31935106 - 31935159
Alignment:
| Q |
30 |
gttacaatcactattaaacttttaactgattccagaacaatttcatcatcaata |
83 |
Q |
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| T |
31935106 |
gttacaatcactattaaacttttaactgattccagaacaatttcatcatcaata |
31935159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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