View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0214_low_15 (Length: 528)
Name: NF0214_low_15
Description: NF0214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0214_low_15 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 400; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 16 - 470
Target Start/End: Complemental strand, 39474336 - 39473881
Alignment:
| Q |
16 |
tcatccggtgagaaatatctgtactttgattaaaagaaatgaaaatgaggaggagcacagaaccctggagaaatggtatttcgacacacaatttgaaagt |
115 |
Q |
| |
|
||||| |||||||||||||||||||||| |||||||||||||||||||| | |||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39474336 |
tcatcaggtgagaaatatctgtactttgcttaaaagaaatgaaaatgagaatgagcactgaaccctggagaaatggtatttcgacacacaatttgaaagt |
39474237 |
T |
|
| Q |
116 |
aaaagtcaacaacaatgaaatggttaacgtaattaaaatatttgtttaattacattcagtggatggttaatgaatgtaatattcactcaatgaaat-aac |
214 |
Q |
| |
|
||||||| |||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
39474236 |
aaaagtcgacaacaattaaatggttaacgtaattaaaatatttgtttaattacgttcagtggatggttaatgaatgtaatattcactcaatgaaattaac |
39474137 |
T |
|
| Q |
215 |
cgcaattttgaaggtcagaaaccatgattttcaaatgtatacttgaacctaaatcgttgttaatgaatatcacgtgtatttgagcacctaaaatcatgta |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39474136 |
tgcaattttgaaggtcagaaaccatgattttcaaatgtatacttgaacctaaatcattgttaatgaatatcacgtgtatttgagcacctaaaatcatgta |
39474037 |
T |
|
| Q |
315 |
cttaatcatttaagttgtcgttgaattttaatgtcaaatttgtgtgtcaaattaatataacaggctaccagagagttgaagaaaacaccaaagagttagg |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39474036 |
cttaatcatttaagttgtcgttgaattttaatgtcaaatttgtgtgtcaaattaatataacaggctaccagagagttgaagaaaacaccaaagagttagg |
39473937 |
T |
|
| Q |
415 |
ttacagatgagaagaaaacatcacatctttctggtttgaattcacaggctaccaga |
470 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |
|
|
| T |
39473936 |
ttacagatgagaagaaaacatcacatctctctggtttgaattcacaggataccaga |
39473881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 243 - 303
Target Start/End: Original strand, 43432484 - 43432544
Alignment:
| Q |
243 |
tttcaaatgtatacttgaacctaaatcgttgttaatgaatatcacgtgtatttgagcacct |
303 |
Q |
| |
|
|||||| |||||| |||||| || ||||| |||||||||||||| || ||||||| ||||| |
|
|
| T |
43432484 |
tttcaagtgtatatttgaacatacatcgtggttaatgaatatcatgtatatttgaacacct |
43432544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 188
Target Start/End: Original strand, 3758649 - 3758686
Alignment:
| Q |
151 |
aaatatttgtttaattacattcagtggatggttaatga |
188 |
Q |
| |
|
|||||| || |||||||||||||||||||||||||||| |
|
|
| T |
3758649 |
aaatatgtggttaattacattcagtggatggttaatga |
3758686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1325 times since January 2019
Visitors: 2391