View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0214_low_153 (Length: 259)
Name: NF0214_low_153
Description: NF0214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0214_low_153 |
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Alignment Details
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 28 - 249
Target Start/End: Complemental strand, 6281094 - 6280872
Alignment:
| Q |
28 |
aataatttcatccataaaaggttaaaaactcaatcaac-aacatacaaagaaaagcaacaatgaattccactaacactgaagatgataataatgcatgtc |
126 |
Q |
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| T |
6281094 |
aataatttcatccataaaaggttaaaaactcaagcaaccaacatacaaagaaaagaaacaatgaattccactaacactgaagatgataataatgcatgcc |
6280995 |
T |
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| Q |
127 |
ttttagcattacaactttcatttgaaccattgatttttaattcagtattgaaagctgcaattgaactaaacttgtttgagatcatatctaaagcaagtcc |
226 |
Q |
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| T |
6280994 |
ttttagctttacaactttcatttgaaccattggtttttaattcagtattgaaagctgcaattgaactaaacttatttgagatcatatctaaagcaagtcc |
6280895 |
T |
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| Q |
227 |
acatggtgtttcagcatcctatg |
249 |
Q |
| |
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|| |||||||||||||||||||| |
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| T |
6280894 |
acgtggtgtttcagcatcctatg |
6280872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 249
Target Start/End: Complemental strand, 6285541 - 6285473
Alignment:
| Q |
181 |
ctgcaattgaactaaacttgtttgagatcatatctaaagcaagtccacatggtgtttcagcatcctatg |
249 |
Q |
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||||||||||| ||||| | ||||| || ||||| || |||| ||||| ||||||||||||||||||| |
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| T |
6285541 |
ctgcaattgaattaaacctatttgatattatatcaaaggcaaatccaccaggtgtttcagcatcctatg |
6285473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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