View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0214_low_16 (Length: 522)
Name: NF0214_low_16
Description: NF0214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0214_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 457; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 30 - 510
Target Start/End: Original strand, 53926796 - 53927274
Alignment:
| Q |
30 |
ggtttaaggttttgtggagaaaacctcaagaatcctgtgagggtggttttgacagttgcaaccaatttcttttgatgttagagaaatcttattgagttgt |
129 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
53926796 |
ggtttaaggttt-gtggagaaaacctcaagaatcctgtgagggtggttttgacagttgcaaccaatttcttttgatgttagagaaatcttattgatttgt |
53926894 |
T |
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| Q |
130 |
tgttcgtttggtggattgaataaatgagtgaatgattgtatatataaacattttgaattgattaaggtttgaagatttcacgtcagagaattttgtcaaa |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53926895 |
tgttcgtttggtggattgaataaatgagtgaatgattgtatatataaacattttgaattgattaaggtttgaagatttcacgtcagagaattttgtcaaa |
53926994 |
T |
|
| Q |
230 |
gagtgaaatttgggattttatttttattttaataaggctgtgtgtgaaggaaccttggccctgattccaatttcttgattatagttaattgttgtgttga |
329 |
Q |
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| T |
53926995 |
gagtgaaatttgggatttttttttt-ttttaataaggctgtgtgtgaaggaaccttggccctgattccaatttcttgattatagttaattgttgtgttga |
53927093 |
T |
|
| Q |
330 |
ttaataattattgaggaacatgaaatttctaagcctggttgggaattcttttggatgttctgcatctggggagagactagtttctgcagcaagagatggt |
429 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53927094 |
ttaataattattgaggaacatgaaatttctaagcctggttgggaattcttttggatgttctgcatctggggagagactagtttctgcagcaagagatggt |
53927193 |
T |
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| Q |
430 |
gatgttcaagaggctaaggccttgttggaatataatccacgtcttgcaaggtattcgacttttggagttcgtaattctcct |
510 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53927194 |
gatgttcaagaggctaaggccttgttggaatataatccacgtcttgcaaggtattcgacttttggagttcgtaattctcct |
53927274 |
T |
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