View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0214_low_17 (Length: 521)
Name: NF0214_low_17
Description: NF0214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0214_low_17 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 132; Significance: 2e-68; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 170 - 439
Target Start/End: Original strand, 42310432 - 42310700
Alignment:
| Q |
170 |
gtgaacgtcattgatgtcaattaata-tataacaacttaccgtgtttaaagtctatattatactatacgaaagatttgagatattatccttatctaaatt |
268 |
Q |
| |
|
|||||| ||||||||||||||||||| ||||||||||| |||| ||||||||| |||| ||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
42310432 |
gtgaacatcattgatgtcaattaataatataacaacttgccgtatttaaagtcaatatcatactttacgaaagatttgagatattatccttatctaaatt |
42310531 |
T |
|
| Q |
269 |
caacttgatgattcaatgtcttttttaattaaatgatatggat-gnnnnnnntgttaaatatattttataaaagagacnnnnnnnnnnnnnnnnnnnnnn |
367 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| || |
|
|
| T |
42310532 |
caacttgatgattcaatgtcttttttaattaaatgatatggatggaaaaaaatgttaaatatattttataaaagaaac---ttttaaaaaaaaaaaaatt |
42310628 |
T |
|
| Q |
368 |
gaaaaaacaacttactttgaagacattttaaaaaagtcctaaaacaactcattttcaagagaagagaaacat |
439 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
42310629 |
gaaaaaacaacttactttgaagacattttaaaaaagtcctagaacaactcattttcaagagaagagaaacat |
42310700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 425 - 513
Target Start/End: Original strand, 42310721 - 42310809
Alignment:
| Q |
425 |
agagaagagaaacataattaaaccaaagatcgcctaagatgttcaacactaacaacaacattggtaggctactcatataatttcatctc |
513 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42310721 |
agagaagaaaaacataattaaaccaaagatcgcctaagatgttcaacactaacaacaacattggtaggctactcatataatttcatctc |
42310809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 90 - 168
Target Start/End: Original strand, 42310147 - 42310225
Alignment:
| Q |
90 |
acatcaccaatgtcaatctataacaccttgacgcgtttgaagttgttatcatatttcacaaaagatttgagatattgtc |
168 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42310147 |
acatcaccaatgtcaatctataacaccttgacgcgtttgaagttgttatcatatttcacaaaagatttgagatattgtc |
42310225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 90 - 175
Target Start/End: Original strand, 42310063 - 42310148
Alignment:
| Q |
90 |
acatcaccaatgtcaatctataacaccttgacgcgtttgaagttgttatcatatttcacaaaagatttgagatattgtcggtgaac |
175 |
Q |
| |
|
|||||||| ||| ||||||||||||| || |||||||||| |||| |||||||||||||||||||||| |||||| || |||||| |
|
|
| T |
42310063 |
acatcaccgatgccaatctataacacattatcgcgtttgaaattgtgatcatatttcacaaaagatttgggatattatcagtgaac |
42310148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1378 times since January 2019
Visitors: 2391