View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0214_low_170 (Length: 254)
Name: NF0214_low_170
Description: NF0214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0214_low_170 |
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| [»] chr3 (1 HSPs) |
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| [»] scaffold0003 (2 HSPs) |
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| [»] chr6 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 28 - 254
Target Start/End: Complemental strand, 11612966 - 11612740
Alignment:
| Q |
28 |
ggaagtatccctaacaatagagaactgttccgaaagggttaagctagattcaacccaaattctaagaattgtaatagatgtttaatttctatttattatg |
127 |
Q |
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| T |
11612966 |
ggaagtgtccctaaccatagagaactgtttcgaaagggttaagctagattcaacccatattctaagaattgtaatagatgtttaatttctatttattatg |
11612867 |
T |
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| Q |
128 |
cttgataatataaagagtaatataaagccatcttagttcctctgtacatggaaatagattaaggatcgtaacaatcatgcccagatgtctttcaaaattc |
227 |
Q |
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| T |
11612866 |
cttgataatataaagagtaatataaagccatcttagttcctctgtacatggaaatagattaaggatcataacaatcatgcccggatgtctttcaaaattc |
11612767 |
T |
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| Q |
228 |
atccattcaggactacattagaataac |
254 |
Q |
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| T |
11612766 |
atccattcaggattacattagaataac |
11612740 |
T |
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Target: scaffold0003 (Bit Score: 72; Significance: 7e-33; HSPs: 2)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 159 - 254
Target Start/End: Original strand, 40654 - 40749
Alignment:
| Q |
159 |
cttagttcctctgtacatggaaatagattaaggatcgtaacaatcatgcccagatgtctttcaaaattcatccattcaggactacattagaataac |
254 |
Q |
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| T |
40654 |
cttagttcctctgtacatggaaataaattaaggatcttaacaatcatgctcagatatctttcaaaattcatccattcatgattacattagaataac |
40749 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 161 - 254
Target Start/End: Original strand, 34023 - 34116
Alignment:
| Q |
161 |
tagttcctctgtacatggaaatagattaaggatcgtaacaatcatgcccagatgtctttcaaaattcatccattcaggactacattagaataac |
254 |
Q |
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| T |
34023 |
tagttcctccgtacatggaaataaattaaggatcttaacaatcatgctcagatatctttcaaaattcatccattcatgattacattagaataac |
34116 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 159 - 254
Target Start/End: Complemental strand, 27446704 - 27446609
Alignment:
| Q |
159 |
cttagttcctctgtacatggaaatagattaaggatcgtaacaatcatgcccagatgtctttcaaaattcatccattcaggactacattagaataac |
254 |
Q |
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| T |
27446704 |
cttagttcctctgtacatggaaataaattaaggatcttaacaatcatgctcagatatctttcaaaattcatccattcatgattacattagaataac |
27446609 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 161 - 254
Target Start/End: Original strand, 14454790 - 14454883
Alignment:
| Q |
161 |
tagttcctctgtacatggaaatagattaaggatcgtaacaatcatgcccagatgtctttcaaaattcatccattcaggactacattagaataac |
254 |
Q |
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|||||| |||||||||||||||||||||| |||| |||||||||||| ||||| |||||||||||||||||||||| || |||||||||||||| |
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| T |
14454790 |
tagttcttctgtacatggaaatagattaatgatcttaacaatcatgctcagatatctttcaaaattcatccattcatgattacattagaataac |
14454883 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 159 - 254
Target Start/End: Complemental strand, 13764432 - 13764337
Alignment:
| Q |
159 |
cttagttcctctgtacatggaaatagattaaggatcgtaacaatcatgcccagatgtctttcaaaattcatccattcaggactacattagaataac |
254 |
Q |
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|||| |||||||||||||||||||| ||| |||||| |||||||||||| ||||| |||||||||||||||||||||| || |||||||||||||| |
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| T |
13764432 |
cttaattcctctgtacatggaaataaattcaggatcttaacaatcatgctcagatatctttcaaaattcatccattcatgattacattagaataac |
13764337 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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