View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0214_low_173 (Length: 252)
Name: NF0214_low_173
Description: NF0214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0214_low_173 |
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| [»] scaffold0259 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-116; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 32581897 - 32582119
Alignment:
| Q |
1 |
tttagcagcccctccaaggaggatgcagtaaacaacagcagcctctacaagttcttcctcaaatggcttatcacactgttttgtcaacttaaaatcaaag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32581897 |
tttagcagcccctccaaggaggatgcagtaaacaacaggagcctctacaagttcttcctcaaatggcttatcacactgttttgtcaacttaaaatcaaag |
32581996 |
T |
|
| Q |
101 |
cattacttattctctgaacactccttgaattcaattgatggacgcttgatagctttcctcccgaaaccatcaccaaaagattcaaattcgatttcgtcat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32581997 |
cattacttattctctgaacactccttgaattcaattgatggacgcttgatagctttcctcccgaaaccatcaccaaaagattcaaattcgatttcgtcat |
32582096 |
T |
|
| Q |
201 |
catcactgtcaacagtcaccgaa |
223 |
Q |
| |
|
||||||||| ||||||| ||||| |
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| T |
32582097 |
catcactgtaaacagtctccgaa |
32582119 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 38 - 223
Target Start/End: Original strand, 32631180 - 32631365
Alignment:
| Q |
38 |
gcagcctctacaagttcttcctcaaatggcttatcacactgttttgtcaacttaaaatcaaagcattacttattctctgaacactccttgaattcaattg |
137 |
Q |
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||||| ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
32631180 |
gcagcttctacaatttcttcctcaaatggcttatcacactgttttgtctacttaaaatcaaagcattacttgttctctgaacactccttgaattcaattg |
32631279 |
T |
|
| Q |
138 |
atggacgcttgatagctttcctcccgaaaccatcaccaaaagattcaaattcgatttcgtcatcatcactgtcaacagtcaccgaa |
223 |
Q |
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| T |
32631280 |
atggacgctggatagctttcctcccgaaaccatcaccaaaagattcaaattcgatttcgtcatcatcactgtcaacagtctccgaa |
32631365 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 37 - 223
Target Start/End: Original strand, 32600066 - 32600252
Alignment:
| Q |
37 |
agcagcctctacaagttcttcctcaaatggcttatcacactgttttgtcaacttaaaatcaaagcattacttattctctgaacactccttgaattcaatt |
136 |
Q |
| |
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|||||| ||||||||||||| |||||||||||||||||||||| ||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||| |
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| T |
32600066 |
agcagcttctacaagttctttctcaaatggcttatcacactgtcttgtctacttaaaatcaaagtattacttgttctctgaacactccttgaattcaatt |
32600165 |
T |
|
| Q |
137 |
gatggacgcttgatagctttcctcccgaaaccatcaccaaaagattcaaattcgatttcgtcatcatcactgtcaacagtcaccgaa |
223 |
Q |
| |
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| T |
32600166 |
gttggacgcttgatagctttcctcccgaaaccatcaccaaaagatccaaattcgatttcgtcatcatcactgtcaacagtctccgaa |
32600252 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 38 - 223
Target Start/End: Original strand, 32657069 - 32657257
Alignment:
| Q |
38 |
gcagcctctacaagttcttcctcaaatggc---ttatcacactgttttgtcaacttaaaatcaaagcattacttattctctgaacactccttgaattcaa |
134 |
Q |
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||||| ||| ||| |||||||||||||||| |||||| ||||||||||| |||||||||||||||||||||| |||||||| |||||||||||||||| |
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| T |
32657069 |
gcagcttctccaatttcttcctcaaatggcggcttatcagactgttttgtctacttaaaatcaaagcattacttgttctctgagcactccttgaattcaa |
32657168 |
T |
|
| Q |
135 |
ttgatggacgcttgatagctttcctcccgaaaccatcaccaaaagattcaaattcgatttcgtcatcatcactgtcaacagtcaccgaa |
223 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
32657169 |
ttgatggacgcttgatagctttcctcccgaaaccatcaccaaaagattcaaattcgatttcgtcatcatcactgtcaacagtctccgaa |
32657257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 82; Significance: 8e-39; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 78 - 215
Target Start/End: Original strand, 41146980 - 41147117
Alignment:
| Q |
78 |
gttttgtcaacttaaaatcaaagcattacttattctctgaacactccttgaattcaattgatggacgcttgatagctttcctcccgaaaccatcaccaaa |
177 |
Q |
| |
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|||||||| ||| |||||||||||||| ||| ||||||| ||||||| ||||||| || |||||| |||||||||||||||| |||||||||||| |||| |
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| T |
41146980 |
gttttgtctactcaaaatcaaagcattgcttgttctctgtacactccatgaattccatagatggatgcttgatagctttccttccgaaaccatcatcaaa |
41147079 |
T |
|
| Q |
178 |
agattcaaattcgatttcgtcatcatcactgtcaacag |
215 |
Q |
| |
|
|||| ||||||| | ||||||||||||||||||||||| |
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| T |
41147080 |
agatccaaattccacttcgtcatcatcactgtcaacag |
41147117 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 44 - 189
Target Start/End: Original strand, 41163709 - 41163855
Alignment:
| Q |
44 |
tctacaagttcttcctcaaa-tggcttatcacactgttttgtcaacttaaaatcaaagcattacttattctctgaacactccttgaattcaattgatgga |
142 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||| ||||| ||| |||||||||||||| | ||||||||| ||||| ||||||| || |||||| |
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| T |
41163709 |
tctacaagttcttcctcaaaatggcttatcacactgtcttgtctactcaaaatcaaagcattgtgtgttctctgaatactccatgaattccatagatgga |
41163808 |
T |
|
| Q |
143 |
cgcttgatagctttcctcccgaaaccatcaccaaaagattcaaattc |
189 |
Q |
| |
|
|||||||||||||| |||| ||||||| |||||| ||| ||||||| |
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|
| T |
41163809 |
tgcttgatagctttcatcccaaaaccataaccaaacgatccaaattc |
41163855 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 61 - 217
Target Start/End: Original strand, 41171844 - 41172000
Alignment:
| Q |
61 |
aaatggcttatcacactgttttgtcaacttaaaatcaaagcattacttattctctgaacactccttgaattcaattgatggacgcttgatagctttcctc |
160 |
Q |
| |
|
|||||||||||| |||| |||||| ||| ||| |||||||||| ||| ||||||||||||||| | | || || ||||| |||| ||||||| |||| |
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|
| T |
41171844 |
aaatggcttatcgcacttctttgtctactcaaagtcaaagcattgcttgttctctgaacactccaagtaatccatatatggatgcttcatagcttccctc |
41171943 |
T |
|
| Q |
161 |
ccgaaaccatcaccaaaagattcaaattcgatttcgtcatcatcactgtcaacagtc |
217 |
Q |
| |
|
|| |||||||||||||||||| ||||||| | ||||||||| || |||||||||||| |
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| T |
41171944 |
ccaaaaccatcaccaaaagatccaaattcaacttcgtcatcgtcgctgtcaacagtc |
41172000 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 37 - 186
Target Start/End: Complemental strand, 21016251 - 21016101
Alignment:
| Q |
37 |
agcagcctctacaagttcttcctcaaa-tggcttatcacactgttttgtcaacttaaaatcaaagcattacttattctctgaacactccttgaattcaat |
135 |
Q |
| |
|
|||||| ||||| |||| ||||||||| ||||||| |||||||||||||| ||| |||||||||||||| | | ||||||||||||||| |||| || || |
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|
| T |
21016251 |
agcagcttctacgagtttttcctcaaaatggcttaccacactgttttgtctactcaaaatcaaagcattgcgtgttctctgaacactccatgaaatccat |
21016152 |
T |
|
| Q |
136 |
tgatggacgcttgatagctttcctcccgaaaccatcaccaaaagattcaaa |
186 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||| ||| |||| |
|
|
| T |
21016151 |
agatggatgcttgatagctttcctcccgaaaccatcaccaaatgatccaaa |
21016101 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 37 - 186
Target Start/End: Original strand, 26398163 - 26398313
Alignment:
| Q |
37 |
agcagcctctacaagttcttcctcaaa-tggcttatcacactgttttgtcaacttaaaatcaaagcattacttattctctgaacactccttgaattcaat |
135 |
Q |
| |
|
|||||| ||||| |||| ||||||||| ||||||| |||||||||||||| ||| |||||||||||||| | | ||||||||||||||| |||| || | |
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|
| T |
26398163 |
agcagcatctacgagtttttcctcaaaatggcttaccacactgttttgtctactcaaaatcaaagcattgcgtgttctctgaacactccatgaaatccgt |
26398262 |
T |
|
| Q |
136 |
tgatggacgcttgatagctttcctcccgaaaccatcaccaaaagattcaaa |
186 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||| ||| |||| |
|
|
| T |
26398263 |
agatggatgcttgatagctttcctcccgaaaccatcaccaaatgatccaaa |
26398313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 144 - 216
Target Start/End: Original strand, 26404661 - 26404733
Alignment:
| Q |
144 |
gcttgatagctttcctcccgaaaccatcaccaaaagattcaaattcgatttcgtcatcatcactgtcaacagt |
216 |
Q |
| |
|
||||||||||||||| | |||||||||||||||||||||||||| | ||||||||| ||| |||||||||| |
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|
| T |
26404661 |
gcttgatagctttcccttcaaaaccatcaccaaaagattcaaattccacttcgtcatcgtcattgtcaacagt |
26404733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0259 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0259
Description:
Target: scaffold0259; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 162 - 213
Target Start/End: Original strand, 21394 - 21445
Alignment:
| Q |
162 |
cgaaaccatcaccaaaagattcaaattcgatttcgtcatcatcactgtcaac |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
21394 |
cgaaaccatcaccaaaagattcaaattcgatttcgtcatcatcactatcaac |
21445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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