View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0214_low_174 (Length: 252)
Name: NF0214_low_174
Description: NF0214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0214_low_174 |
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Alignment Details
Target: chr1 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 2141922 - 2142130
Alignment:
| Q |
1 |
ttttcatgttatattcttgtgttgtggctacattttgttattttctctatgccgattttttcaaactacaagtttagccaacaaaaacaaatgtattttg |
100 |
Q |
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| T |
2141922 |
ttttcatgttatattcctgtgttgtggctacgttttgttattttctctatgccgatttttccaaactacaagtttagccaacaaaaacaaatgtattttg |
2142021 |
T |
|
| Q |
101 |
gtctatgaatttctcttataattttgttttgaaaactcggtatctcatctaagaaccgtctaattcgaggggtctaattacacaatttataatcggggaa |
200 |
Q |
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||||||||||||||| ||||||||||||||||||||| |||||| |||||||||| ||| ||||| ||||||||||||||||||| || ||||||||| |
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| T |
2142022 |
gtctatgaatttctcatataattttgttttgaaaactaagtatctgatctaagaactgtccaattcaaggggtctaattacacaatctacaatcggggag |
2142121 |
T |
|
| Q |
201 |
catttaaag |
209 |
Q |
| |
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||||||||| |
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| T |
2142122 |
catttaaag |
2142130 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 127 - 172
Target Start/End: Complemental strand, 20505758 - 20505713
Alignment:
| Q |
127 |
ttttgaaaactcggtatctcatctaagaaccgtctaattcgagggg |
172 |
Q |
| |
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| T |
20505758 |
ttttgaaaactcggcatctgatctaagaaccggctaatttgagggg |
20505713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 127 - 172
Target Start/End: Complemental strand, 29861876 - 29861831
Alignment:
| Q |
127 |
ttttgaaaactcggtatctcatctaagaaccgtctaattcgagggg |
172 |
Q |
| |
|
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|
| T |
29861876 |
ttttgaaaactcggtatccgatctaagaatcgactaattcgagggg |
29861831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 116 - 169
Target Start/End: Original strand, 39229191 - 39229244
Alignment:
| Q |
116 |
ttataattttgttttgaaaactcggtatctcatctaagaaccgtctaattcgag |
169 |
Q |
| |
|
|||||||||| ||||||||||||| |||| |||||| ||||| |||||||||| |
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|
| T |
39229191 |
ttataatttttttttgaaaactcgatatccgatctaaaaaccgactaattcgag |
39229244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 64
Target Start/End: Original strand, 4528756 - 4528812
Alignment:
| Q |
8 |
gttatattcttgtgttgtggctacattttgttattttctctatgccgattttttcaa |
64 |
Q |
| |
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||||||||||||||||||| || || | |||||||||||||||| |||||||||| |
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|
| T |
4528756 |
gttatattcttgtgttgtgattatgttcttttattttctctatgcccattttttcaa |
4528812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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