View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0214_low_183 (Length: 248)
Name: NF0214_low_183
Description: NF0214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0214_low_183 |
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Alignment Details
Target: chr4 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 15 - 220
Target Start/End: Original strand, 56281283 - 56281488
Alignment:
| Q |
15 |
aatcaagggcttggctccgcctttaaataannnnnnnnnnnnncatataccatacttgaattatccccttctttattttcttgctcaagattcaaagcgt |
114 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56281283 |
aatcaagggcttggctccgcctttaaataatttttctttttttcatataccatacttgaattatccccttctttattttcttgctcaagattcaaagcgt |
56281382 |
T |
|
| Q |
115 |
ttgataccatgagaaattgaaagagacaccaaagactttcagcttcattgtattgcaatgctaatattggcatttggctcaaatgattcatttcgttcta |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56281383 |
ttgataccatgagaaattgaaagagacaccaaagactttcagcttcattgtattgcaatgctaatattggcatttggctcaaatgattcatttcgttcta |
56281482 |
T |
|
| Q |
215 |
tttatt |
220 |
Q |
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|||||| |
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| T |
56281483 |
tttatt |
56281488 |
T |
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