View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0214_low_189 (Length: 243)
Name: NF0214_low_189
Description: NF0214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0214_low_189 |
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| [»] scaffold0391 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 201; Significance: 1e-110; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 33975328 - 33975536
Alignment:
| Q |
1 |
aaatgcaagtgacacggacaataacaactacaataattacttcatcatccttcatgatattctaagagaacttggaatttaccaaagcaccaaggaacca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33975328 |
aaatgcaagtgacacggacaataacaactacaataatcacttcatcatccttcatgatattctaagagaacttggaatttaccaaagcaccaaggaacca |
33975427 |
T |
|
| Q |
101 |
attgagcaaagaaaaagactgattattgacatgaataacaataaaagtgggctcgcggagaagcagcaaggcttgatgacccgtatattttcaaagttta |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33975428 |
tttgagcaaagaaaaagactgattattgacatgaataacaataaaagtgggctcgcggagaagcagcaaggcttgatgacccgtatattttcaaagttta |
33975527 |
T |
|
| Q |
201 |
tgagattgt |
209 |
Q |
| |
|
||||||||| |
|
|
| T |
33975528 |
tgagattgt |
33975536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 33952722 - 33952930
Alignment:
| Q |
1 |
aaatgcaagtgacacggacaataacaactacaataattacttcatcatccttcatgatattctaagagaacttggaatttaccaaagcaccaaggaacca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
33952722 |
aaatgcaagtgacacggacaataacaactacaataatcacttcatcatccttcatgatattctaagagaacttggaatttaccaaagcgccaaggaacca |
33952821 |
T |
|
| Q |
101 |
attgagcaaagaaaaagactgattattgacatgaataacaataaaagtgggctcgcggagaagcagcaaggcttgatgacccgtatattttcaaagttta |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |
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|
| T |
33952822 |
tttgagcaaagaaaaagactgattattgacattaataaaaataaaagtgggctcgcggagaagcagcaaggcttgatgacctgtatattgtcaaagttta |
33952921 |
T |
|
| Q |
201 |
tgagattgt |
209 |
Q |
| |
|
||||||||| |
|
|
| T |
33952922 |
tgagattgt |
33952930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 33960028 - 33960236
Alignment:
| Q |
1 |
aaatgcaagtgacacggacaataacaactacaataattacttcatcatccttcatgatattctaagagaacttggaatttaccaaagcaccaaggaacca |
100 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33960028 |
aaatgcaagtgacacggacgataacaactacaataatcacttcatcatccttcatgatattctaagagaacttggaatttaccaaagcaccaaggaacca |
33960127 |
T |
|
| Q |
101 |
attgagcaaagaaaaagactgattattgacatgaataacaataaaagtgggctcgcggagaagcagcaaggcttgatgacccgtatattttcaaagttta |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |
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|
| T |
33960128 |
tttgagcaaagaaaaagactgattattgacattaataaaaataaaagtgggctcgcggagaagcagcaaggcttgatgacctgtatattgtcaaagttta |
33960227 |
T |
|
| Q |
201 |
tgagattgt |
209 |
Q |
| |
|
||||||||| |
|
|
| T |
33960228 |
tgagattgt |
33960236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 33992241 - 33992449
Alignment:
| Q |
1 |
aaatgcaagtgacacggacaataacaactacaataattacttcatcatccttcatgatattctaagagaacttggaatttaccaaagcaccaaggaacca |
100 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |
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|
| T |
33992241 |
aaatgcaagtgacacagacaataacaactacaataatcacttcatcatccttcatgatattctaagagatcttggaatttaccaaagcaccaagcaacca |
33992340 |
T |
|
| Q |
101 |
attgagcaaagaaaaagactgattattgacatgaataacaataaaagtgggctcgcggagaagcagcaaggcttgatgacccgtatattttcaaagttta |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| |||| ||||| ||||||||||||||||||| ||||| ||||||||||||| ||||| | | |
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|
| T |
33992341 |
tttgagcaaagaaaaagactgattattgacattaataaaaatagaagtgagctcgcggagaagcagcaaagcttgttgacccgtatattgtcaaaagtaa |
33992440 |
T |
|
| Q |
201 |
tgagattgt |
209 |
Q |
| |
|
||||||||| |
|
|
| T |
33992441 |
tgagattgt |
33992449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 33913550 - 33913678
Alignment:
| Q |
1 |
aaatgcaagtgacacggacaataacaactacaataattacttcatcatccttcatgatattctaagagaacttggaatttaccaaagcaccaaggaacca |
100 |
Q |
| |
|
||||||||||||||| || | | || ||||||||| ||||||| ||||||||||| |||||||||| || |||| ||| |||| || | |||||||| |
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|
| T |
33913550 |
aaatgcaagtgacacagaaagttactactacaatagccacttcatattccttcatgatcttctaagagagctaggaaattatcaaaacaaccaggaacca |
33913649 |
T |
|
| Q |
101 |
attgagcaaagaaaaagactgattattga |
129 |
Q |
| |
|
||||| |||||||||||||| ||||||| |
|
|
| T |
33913650 |
attgaacaaagaaaaagacttcttattga |
33913678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 33942280 - 33942397
Alignment:
| Q |
1 |
aaatgcaagtgacacggacaataacaactacaataattacttcatcatccttcatgatattctaagagaacttggaatttaccaaagcaccaaggaacca |
100 |
Q |
| |
|
||||||||||||||| || ||| || |||||| |||| |||||||| ||||||||||| | || ||||| ||||| | ||| |||| |||| ||||||| |
|
|
| T |
33942280 |
aaatgcaagtgacacagaaaattactactaca-taatcacttcatcgtccttcatgatctgctgagagagcttgggaattatcaaaacacccaggaacct |
33942378 |
T |
|
| Q |
101 |
attgagcaaagaaaaagac |
119 |
Q |
| |
|
||||| ||||||||||||| |
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|
| T |
33942379 |
attgaacaaagaaaaagac |
33942397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 169; Significance: 9e-91; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 7 - 207
Target Start/End: Complemental strand, 8278028 - 8277828
Alignment:
| Q |
7 |
aagtgacacggacaataacaactacaataattacttcatcatccttcatgatattctaagagaacttggaatttaccaaagcaccaaggaaccaattgag |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
8278028 |
aagtgacacggacaataacaactacaataatcacttcatcatccttcatgatattctaagagaacttggaatttaccaaagcaccaaggaaccatttgag |
8277929 |
T |
|
| Q |
107 |
caaagaaaaagactgattattgacatgaataacaataaaagtgggctcgcggagaagcagcaaggcttgatgacccgtatattttcaaagtttatgagat |
206 |
Q |
| |
|
|||||| ||| |||||||||||||| |||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |
|
|
| T |
8277928 |
caaagagaaaaactgattattgacaagaataaaaataaaagtgggctcgcggagaagcagcaaggtttgatgacccgtatattgtcaaagtttatgagat |
8277829 |
T |
|
| Q |
207 |
t |
207 |
Q |
| |
|
| |
|
|
| T |
8277828 |
t |
8277828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 2891587 - 2891495
Alignment:
| Q |
1 |
aaatgcaagtgacacggacaataacaactacaataattacttcatcatccttcatgatattctaagagaacttggaatttaccaaagcaccaa |
93 |
Q |
| |
|
||||||||||||||| ||||| ||||||| |||| ||||||||||| ||||| || ||||| ||| |||||||||| ||||||||||| |
|
|
| T |
2891587 |
aaatgcaagtgacacatacaattacaactataatagccacttcatcatctttcataatcttctactagagcttggaatttctcaaagcaccaa |
2891495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0391 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: scaffold0391
Description:
Target: scaffold0391; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 12273 - 12408
Alignment:
| Q |
1 |
aaatgcaagtgacacggacaataacaactacaataattacttcatcatccttcatgatattctaagagaacttggaatttaccaaagcaccaaggaacca |
100 |
Q |
| |
|
|||||||||||| | |||||| ||||||||||||| |||||||||||||||||||| |||||||||| ||||||||||||||| |||| || |||||| |
|
|
| T |
12273 |
aaatgcaagtgatgcagacaattacaactacaataaccacttcatcatccttcatgatcttctaagagatcttggaatttaccaatgcactaaagaacca |
12372 |
T |
|
| Q |
101 |
attgagcaaagaaaaagactgattattgacatgaat |
136 |
Q |
| |
|
|||||| | |||||||| |||||||||||||||||| |
|
|
| T |
12373 |
attgagaagagaaaaaggctgattattgacatgaat |
12408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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