View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0214_low_2 (Length: 699)
Name: NF0214_low_2
Description: NF0214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0214_low_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 507; Significance: 0; HSPs: 17)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 507; E-Value: 0
Query Start/End: Original strand, 45 - 695
Target Start/End: Original strand, 15076372 - 15077022
Alignment:
| Q |
45 |
tcacttcctaaagaaaatgcatggatattgtcccaaaatttatattttcaatgtttttggtgtccatcaaatttgatccaacctataatctcttttcaaa |
144 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
15076372 |
tcacttcctaaagaaaatgggtggggattgtcccaaaatgtatattttcaatgtttttggtgtccatcaaatatgatccaacctataatctcttttcaaa |
15076471 |
T |
|
| Q |
145 |
atcattttcaagccaaagacagtgatattgttgttgcaagtttaccaaaatcaggcacaacttggttgagagcacttacatttgcaattgtaaatcgcaa |
244 |
Q |
| |
|
| |||| ||||||||| ||| ||||||||||||||| || ||||||||||||||||| ||||||||||||||| |||||||| ||||||| |||||||| |
|
|
| T |
15076472 |
acaatttccaagccaaacacaatgatattgttgttgctagcttaccaaaatcaggcaccacttggttgagagcatttacatttacaattgttaatcgcaa |
15076571 |
T |
|
| Q |
245 |
tcaatactcttttgagaatcatccattacttaaatccattatacatgaactagtgccatccattgaacgtaatctttatgctgctgatatcaaagaccga |
344 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15076572 |
tcaatactcttttgagaatcatccattacttaaatccattatacatgaactagtgccttccattgaacgtaatctttatgctgctgatatcaaagaccga |
15076671 |
T |
|
| Q |
345 |
attcctctctcaaaaataattgaaccaaggatatttgggactcacattccattttcttcacttgccaagtcaattcaagagtctaattgtaagatagttt |
444 |
Q |
| |
|
|||||||| ||||||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||||||| || |||||||||||||||| |
|
|
| T |
15076672 |
attcctctatcaaaaataattgaaccaaggctttttgggactcacattccatttccttcacttgccaagtcaattcaagactccaattgtaagatagttt |
15076771 |
T |
|
| Q |
445 |
atataagtagaaatccatttgatacttttgtgtcatattggattttcgttaataaaataaggtcaaaatatccatctttacaaattttaagcttagagga |
544 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| | |||||||||||||||| |
|
|
| T |
15076772 |
atataagtagaaatccatttgatacttttgtgtcatattggattttcattaataaaataaggtcaaaacatccatctttaccagttttaagcttagagga |
15076871 |
T |
|
| Q |
545 |
agcttttgaaagtttttgtaacggggtaactccatttggttcattttgggagcataatttaggttacttgaaagaaagtatgactaggccagacaaagtt |
644 |
Q |
| |
|
| ||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
15076872 |
aacttttgaaagtttttgtaatgggattactccatttggttcattttgggagcataatttaggttacttgaaagaaagtatgattaggccagacaaagtt |
15076971 |
T |
|
| Q |
645 |
ttatttttgaaatatgaagaacttaaagaagattcaatttttcatctcact |
695 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
15076972 |
atatttttgaaatatgaagaacttaaagaagatccaatttttcatgtcact |
15077022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 30 - 660
Target Start/End: Complemental strand, 15172139 - 15171523
Alignment:
| Q |
30 |
aagcagttcatcctttcacttcctaaagaaaatgcatggatattgtcccaaaatttatattttcaatgtttttggtgtccatcaaatttgatccaaccta |
129 |
Q |
| |
|
|||||| | ||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
15172139 |
aagcaggtgatcctctcacttcctaaagaaaatgcatggatattgtcccaaaatgtatattttcaatgtttttggtgtccatcaaatatgatccaaccta |
15172040 |
T |
|
| Q |
130 |
taatctcttttcaaaatcattttcaagccaaagacagtgatattgttgttgcaagtttaccaaaatcaggcacaacttggttgagagcacttacatttgc |
229 |
Q |
| |
|
|||||||||||||||| |||| ||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
15172039 |
taatctcttttcaaaacaatttccaagccaaacacaatgata-----------------ccaaaatcaggcacaacttggttgagagcacttacatttac |
15171957 |
T |
|
| Q |
230 |
aattgtaaatcgcaatcaatactcttttgagaatcatccattacttaaatccattatacatgaactagtgccatccattgaacgtaatctttatgctgct |
329 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
15171956 |
aattgtaaatcgcaatcaatactcttttgagaatcattcattacttaaatccattatacataaactagtgccttccattgaacgtaatctttatgctgct |
15171857 |
T |
|
| Q |
330 |
gatatcaaagaccgaattcctctctcaaaaataattgaaccaaggatatttgggactcacattccattttcttcacttgccaagtcaattcaagagtcta |
429 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||| | ||||||||||||||||||||| |||||||||||||||||||||||||||| | |
|
|
| T |
15171856 |
gatatcaaagaccgaattcctctatcaaaaataattgaaccaaggctttttgggactcacattccatttccttcacttgccaagtcaattcaagagtcca |
15171757 |
T |
|
| Q |
430 |
attgtaaga---tagtttatataagtagaaatccatttgatacttttgtgtcatattggattttcgttaataaaataaggtcaaaatatccatctttaca |
526 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
15171756 |
attgtaagatagtagtttatataagtagaaatccatttgatacttttgtgtcatattggagtttcgttaataaaataaggtcaaaacatccatctttatc |
15171657 |
T |
|
| Q |
527 |
aattttaagcttagaggaagcttttgaaagtttttgtaacggggtaactccatttggttcattttgggagcataatttaggttacttgaaagaaagtatg |
626 |
Q |
| |
|
| ||||||||||||||||| ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15171656 |
agttttaagcttagaggaaacttttgaaagtttttgtaatggggttactccatttggttcattttgggagcataatttaggttacttgaaagaaagtatg |
15171557 |
T |
|
| Q |
627 |
actaggccagacaaagttttatttttgaaatatg |
660 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| |
|
|
| T |
15171556 |
actaggtcagacaaagttttatttttgaaatatg |
15171523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 29 - 480
Target Start/End: Complemental strand, 15169319 - 15168868
Alignment:
| Q |
29 |
taagcagttcatcctttcacttcctaaagaaaatgcatggatattgtcccaaaatttatattttcaatgtttttggtgtccatcaaatttgatccaacct |
128 |
Q |
| |
|
||||||| | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15169319 |
taagcaggtgatcctctcacttcctaaagaaaatgcatggatattgtcccaaaatttatattttcaatgtttttggtgtccatcaaatttgatccaacct |
15169220 |
T |
|
| Q |
129 |
ataatctcttttcaaaatcattttcaagccaaagacagtgatattgttgttgcaagtttaccaaaatcaggcacaacttggttgagagcacttacatttg |
228 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
15169219 |
ataatctcttttcaaaatcattttcaagccaaagatagtgatattgttgttgcaagcttaccaaaatcaggcaccacttggttgagagcacttacattta |
15169120 |
T |
|
| Q |
229 |
caattgtaaatcgcaatcaatactcttttgagaatcatccattacttaaatccattatacatgaactagtgccatccattgaacgtaatctttatgctgc |
328 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| |
|
|
| T |
15169119 |
caattgtaaatcgcaatcaatactcctttgagaatcatccattacttaaatccattatacataaactagtgccttccattgaacgtaatctttatgctgc |
15169020 |
T |
|
| Q |
329 |
tgatatcaaagaccgaattcctctctcaaaaataattgaaccaaggatatttgggactcacattccattttcttcacttgccaagtcaattcaagagtct |
428 |
Q |
| |
|
|||||| || |||| ||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
15169019 |
tgatatgaaggaccaaattcctatatcaaaaataattgaaccaaggatatttgggactcacattccattttcttcacttgccaagtcgattcaagagtct |
15168920 |
T |
|
| Q |
429 |
aattgtaagatagtttatataagtagaaatccatttgatacttttgtgtcat |
480 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15168919 |
aattgtaagatagtttatataagtagaaatccatttgatacttttgtgtcat |
15168868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 467 - 695
Target Start/End: Complemental strand, 15165349 - 15165121
Alignment:
| Q |
467 |
tacttttgtgtcatattggattttcgttaataaaataaggtcaaaatatccatctttacaaattttaagcttagaggaagcttttgaaagtttttgtaac |
566 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||| ||||||||||||||||||| |
|
|
| T |
15165349 |
tacttttgtgtcatattggagtttcgttaataaaataaggtcaaaacatccatctttacaaattgtaagcttaaaggaaacttttgaaagtttttgtaat |
15165250 |
T |
|
| Q |
567 |
ggggtaactccatttggttcattttgggagcataatttaggttacttgaaagaaagtatgactaggccagacaaagttttatttttgaaatatgaagaac |
666 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| |
|
|
| T |
15165249 |
ggggtaactccatttggttcattttgggagcatactttaggttacttgaaagaaagtatgactagtccagacaaaattttatttttgaaatatgaagaac |
15165150 |
T |
|
| Q |
667 |
ttaaagaagattcaatttttcatctcact |
695 |
Q |
| |
|
||||||||||| ||||||||||| ||||| |
|
|
| T |
15165149 |
ttaaagaagatccaatttttcatgtcact |
15165121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 172; E-Value: 5e-92
Query Start/End: Original strand, 89 - 688
Target Start/End: Complemental strand, 4506990 - 4506386
Alignment:
| Q |
89 |
ttttcaatgtttttggtgtccatcaaatttgatccaacctataatctcttttcaaaatcattttcaagccaaagacagtgatattgttgttgcaagttta |
188 |
Q |
| |
|
||||||| |||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| || ||| |
|
|
| T |
4506990 |
ttttcaaggtttttggtgtccatcaaatttaatccaacctataaactcttttcaaaatcattttcaagccaaagacaatgatattgttgttgctagctta |
4506891 |
T |
|
| Q |
189 |
ccaaaatcaggcacaacttggttgagagcacttacatttgcaattgtaaatcgcaatcaatactct---tttgagaatcatccattacttaaatccatta |
285 |
Q |
| |
|
|||||||| |||||||||||||||| |||||| |||||||| ||||| ||||| |||| | |||| || || |||||||||||||||||| || | |
|
|
| T |
4506890 |
ccaaaatccggcacaacttggttgaaagcactcacatttgccattgttaatcgtcatcatttctcttccttagaagatcatccattacttaaattcaatt |
4506791 |
T |
|
| Q |
286 |
tacatgaactagtgccatccattgaacgtaatctttatgctg---ctgata-tcaaag--accgaattcctctctcaaaaataattgaaccaaggatatt |
379 |
Q |
| |
|
||||||||||||||| | | ||||| ||| |||||| || ||||| || || | |||| || ||||| || | |||||||||| | || |
|
|
| T |
4506790 |
cacatgaactagtgcctttctttgaatacaatgtttatggtggtagtgatagccagagttttcaaattaacctatcaaacatgaatgaaccaaggct-tt |
4506692 |
T |
|
| Q |
380 |
tgggactcacattccattttcttcacttgccaagtcaattcaagagtctaattgtaagatagtttatataagtagaaatccatttgatacttttgtgtca |
479 |
Q |
| |
|
| ||||||| ||||||| | |||||| |||||||||||| ||||||| |||||||| ||| |||||||| |||||||||| ||||| ||||||||||| |
|
|
| T |
4506691 |
ttggactcatgttccattcttttcactagccaagtcaattaaagagtccaattgtaaaataatttatatatgtagaaatccttttgacacttttgtgtct |
4506592 |
T |
|
| Q |
480 |
tattggattttcgttaataaaataaggtcaaaatatccatctttacaaattttaagcttagaggaagcttttgaaagtttttgtaacggggtaactccat |
579 |
Q |
| |
|
|||| ||| | ||||||||||||||||| ||| |||||||| || ||||||| |||| ||| ||||||||||| |||| | ||| ||| ||||| |
|
|
| T |
4506591 |
gcttggttttatgctaataaaataaggtcaa---atcaatctttaccaactttaagcatagatgaaatttttgaaagttattgtgatgggataagtccat |
4506495 |
T |
|
| Q |
580 |
ttggttcattttgggagcataatttaggttacttgaaagaaagtatgactaggccagacaaagttttatttttgaaatatgaagaacttaaagaagattc |
679 |
Q |
| |
|
|||||||||||||||| ||||| || ||||||||||| ||||| ||| |||| || |||||||| |||| |||||||||||||| ||||||| || | |
|
|
| T |
4506494 |
ttggttcattttgggatcataagttgggttacttgaaggaaagcatggctagatcacacaaagttctattcttgaaatatgaagatgttaaagagaatgc |
4506395 |
T |
|
| Q |
680 |
aatttttca |
688 |
Q |
| |
|
||||||||| |
|
|
| T |
4506394 |
aatttttca |
4506386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 364 - 491
Target Start/End: Original strand, 15066747 - 15066874
Alignment:
| Q |
364 |
ttgaaccaaggatatttgggactcacattccattttcttcacttgccaagtcaattcaagagtctaattgtaagatagtttatataagtagaaatccatt |
463 |
Q |
| |
|
||||||||||| | | ||| |||||||| |||||| |||| | ||||||||||||||||||| |||||||| ||| |||||||| ||||||| ||||| |
|
|
| T |
15066747 |
ttgaaccaaggctttatggaactcacatgccatttccttcgttgcccaagtcaattcaagagtccaattgtaaaataatttatatatgtagaaacccatt |
15066846 |
T |
|
| Q |
464 |
tgatacttttgtgtcatattggattttc |
491 |
Q |
| |
|
|||||| ||||| |||||||||| |||| |
|
|
| T |
15066847 |
tgatacatttgtatcatattggactttc |
15066874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 365 - 491
Target Start/End: Complemental strand, 15214692 - 15214566
Alignment:
| Q |
365 |
tgaaccaaggatatttgggactcacattccattttcttcacttgccaagtcaattcaagagtctaattgtaagatagtttatataagtagaaatccattt |
464 |
Q |
| |
|
|||||||||| | ||||| |||||||| |||||| |||| | |||||||| || ||||||| |||||||| ||| |||||||| ||||||| |||||| |
|
|
| T |
15214692 |
tgaaccaaggctttttggaactcacatgccatttccttcgttgcccaagtcagttaaagagtccaattgtaaaataatttatatatgtagaaacccattt |
15214593 |
T |
|
| Q |
465 |
gatacttttgtgtcatattggattttc |
491 |
Q |
| |
|
||||| ||||| ||||||||||||||| |
|
|
| T |
15214592 |
gatacatttgtatcatattggattttc |
15214566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 89 - 228
Target Start/End: Original strand, 15164364 - 15164506
Alignment:
| Q |
89 |
ttttcaatgtttttggtgtccatcaaatttgatccaacctataatctcttttcaaaatcattttcaagccaaagacagtgatattgttgttgc---aagt |
185 |
Q |
| |
|
||||||| ||||||||||| ||||||||| ||||||||||||| |||| |||||||| |||||||||| ||||||| || | |||||||||| ||| |
|
|
| T |
15164364 |
ttttcaaggtttttggtgttgatcaaatttaatccaacctataaactctgttcaaaatgattttcaagctaaagacaatgctgttgttgttgccaacagt |
15164463 |
T |
|
| Q |
186 |
ttaccaaaatcaggcacaacttggttgagagcacttacatttg |
228 |
Q |
| |
|
|||||| ||| |||| |||||||||| ||||||||| |||| |
|
|
| T |
15164464 |
ataccaagatctggcatcacttggttgaaagcacttacgtttg |
15164506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 127 - 276
Target Start/End: Original strand, 15750923 - 15751076
Alignment:
| Q |
127 |
ctataatctcttttcaaaatcattttcaagcc-aaagacagtgatattgttgttgcaagtttaccaaaatcaggcacaacttggttgagagcacttacat |
225 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| |||||| |||||||||| | | |||||| | || ||||| ||||||| ||| || || | |
|
|
| T |
15750923 |
ctataatctcttttcaaaatcattttcaagccaaaagatagtgatgttgttgttgcctctatgccaaaaactggaacaacatggttgaaagccctaacct |
15751022 |
T |
|
| Q |
226 |
ttgcaattgtaaatcgcaatcaatac---tcttttgagaatcatccattactta |
276 |
Q |
| |
|
|||| ||||| ||||| |||| | | ||||| ||||||||||||||||||| |
|
|
| T |
15751023 |
ttgctattgttaatcgtaatcgtttctcttctttagagaatcatccattactta |
15751076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 97 - 182
Target Start/End: Original strand, 14999896 - 14999981
Alignment:
| Q |
97 |
gtttttggtgtccatcaaatttgatccaacctataatctcttttcaaaatcattttcaagccaaagacagtgatattgttgttgca |
182 |
Q |
| |
|
|||||||||||||| ||| || ||||||||||||| |||||||| |||| |||||||| ||||||| |||||| || |||||||| |
|
|
| T |
14999896 |
gtttttggtgtccaccaatattaatccaacctataaactcttttcgaaataattttcaaaccaaagatagtgatgttattgttgca |
14999981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 99 - 182
Target Start/End: Original strand, 15066473 - 15066556
Alignment:
| Q |
99 |
ttttggtgtccatcaaatttgatccaacctataatctcttttcaaaatcattttcaagccaaagacagtgatattgttgttgca |
182 |
Q |
| |
|
|||||||||||||||| | | |||||| || | | ||||||||||||| ||||||| |||||||| ||||||||||| |||||| |
|
|
| T |
15066473 |
ttttggtgtccatcaactcttatccaatctgtgaactcttttcaaaataattttcatgccaaagatagtgatattgtagttgca |
15066556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 99 - 182
Target Start/End: Complemental strand, 15214970 - 15214887
Alignment:
| Q |
99 |
ttttggtgtccatcaaatttgatccaacctataatctcttttcaaaatcattttcaagccaaagacagtgatattgttgttgca |
182 |
Q |
| |
|
|||||||||||||||| | | || ||| || | | ||||||||||||| ||||||| || |||||||||||||||||||||||| |
|
|
| T |
15214970 |
ttttggtgtccatcaactcttattcaatctgtgaactcttttcaaaataattttcatgctaaagacagtgatattgttgttgca |
15214887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 99 - 209
Target Start/End: Original strand, 13033142 - 13033252
Alignment:
| Q |
99 |
ttttggtgtccatcaaatttgatccaacctataatctcttttcaaaatcattttcaagccaaagacagtgatattgttgttgcaagtttaccaaaatcag |
198 |
Q |
| |
|
||||||||||||||| || | |||||| || | | | ||||||||||| | ||||| |||||||||| |||||||||||||||| | | |||||||| | |
|
|
| T |
13033142 |
ttttggtgtccatcatatcttatccaatctgtcaacacttttcaaaataaatttcatgccaaagacaatgatattgttgttgcatctatgccaaaatctg |
13033241 |
T |
|
| Q |
199 |
gcacaacttgg |
209 |
Q |
| |
|
|||| |||||| |
|
|
| T |
13033242 |
gcaccacttgg |
13033252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 354 - 486
Target Start/End: Original strand, 13033412 - 13033544
Alignment:
| Q |
354 |
tcaaaaataattgaaccaaggatatttgggactcacattccattttcttcacttgccaagtcaattcaagagtctaattgtaagatagtttatataagta |
453 |
Q |
| |
|
||||| || |||||||||||| | ||||| |||||||||||||| ||| | ||||||| || ||||||| | |||||| || |||||||| ||| |
|
|
| T |
13033412 |
tcaaatatgattgaaccaaggctttttggcactcacattccattcctttcgttgcccaagtcggttaaagagtccagttgtaaaatcatttatatatgta |
13033511 |
T |
|
| Q |
454 |
gaaatccatttgatacttttgtgtcatattgga |
486 |
Q |
| |
|
|||| ||||||||||| ||||| |||||||||| |
|
|
| T |
13033512 |
gaaacccatttgatacatttgtatcatattgga |
13033544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 99 - 182
Target Start/End: Original strand, 15052271 - 15052354
Alignment:
| Q |
99 |
ttttggtgtccatcaaatttgatccaacctataatctcttttcaaaatcattttcaagccaaagacagtgatattgttgttgca |
182 |
Q |
| |
|
|||||||||||||| | || |||||| ||| ||||||||||||||| ||||||| || ||||||||||||||| ||| |||| |
|
|
| T |
15052271 |
ttttggtgtccatctacatttatccaatctacgatctcttttcaaaataattttcatgctaaagacagtgatattattgctgca |
15052354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 580 - 674
Target Start/End: Original strand, 15751383 - 15751477
Alignment:
| Q |
580 |
ttggttcattttgggagcataatttaggttacttgaaagaaagtatgactaggccagacaaagttttatttttgaaatatgaagaacttaaagaa |
674 |
Q |
| |
|
|||||||||||||||| ||| ||||| || ||||| || || || |||| |||||||| |||||||| ||||||||||||| ||||||||| |
|
|
| T |
15751383 |
ttggttcattttgggaccatgtgttaggctatttgaacgagagcatagctagaccagacaaggttttattcatgaaatatgaagatcttaaagaa |
15751477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 365 - 473
Target Start/End: Original strand, 15000171 - 15000279
Alignment:
| Q |
365 |
tgaaccaaggatatttgggactcacattccattttcttcacttgccaagtcaattcaagagtctaattgtaagatagtttatataagtagaaatccattt |
464 |
Q |
| |
|
||||||||| | ||||| ||||| ||||||||| ||| | |||||||||||| | || || ||||||||||| |||||||| |||| |||||| || |
|
|
| T |
15000171 |
tgaaccaagactttttggaactcatattccatttaattccttggccaagtcaattaaggaatccaattgtaagatcatttatatatgtaggaatccactt |
15000270 |
T |
|
| Q |
465 |
gatactttt |
473 |
Q |
| |
|
|| |||||| |
|
|
| T |
15000271 |
gacactttt |
15000279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 2e-23; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 363 - 491
Target Start/End: Complemental strand, 1618318 - 1618190
Alignment:
| Q |
363 |
attgaaccaaggatatttgggactcacattccattttcttcacttgccaagtcaattcaagagtctaattgtaagatagtttatataagtagaaatccat |
462 |
Q |
| |
|
|||||||||||| | ||||| ||||| ||||| ||| |||| || |||||||||||| |||| || |||||||||||| |||| ||| ||||||| |||| |
|
|
| T |
1618318 |
attgaaccaaggctttttggaactcatattccttttacttctctagccaagtcaattaaagaatccaattgtaagataatttacatatgtagaaacccat |
1618219 |
T |
|
| Q |
463 |
ttgatacttttgtgtcatattggattttc |
491 |
Q |
| |
|
|||| ||||||||||| ||||||| |||| |
|
|
| T |
1618218 |
ttgacacttttgtgtcttattggaatttc |
1618190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 363 - 491
Target Start/End: Complemental strand, 1626883 - 1626755
Alignment:
| Q |
363 |
attgaaccaaggatatttgggactcacattccattttcttcacttgccaagtcaattcaagagtctaattgtaagatagtttatataagtagaaatccat |
462 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||| || ||| || |||||||| ||| ||||||| |||||||||||| |||| ||| |||| || |||| |
|
|
| T |
1626883 |
attgaaccaaggatttttggaactcacattcctttccattctctagccaagtctattaaagagtccaattgtaagataatttacatatgtaggaacccat |
1626784 |
T |
|
| Q |
463 |
ttgatacttttgtgtcatattggattttc |
491 |
Q |
| |
|
|||| ||||||||||| ||||||| |||| |
|
|
| T |
1626783 |
ttgacacttttgtgtcttattggaatttc |
1626755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 127 - 278
Target Start/End: Complemental strand, 1618563 - 1618409
Alignment:
| Q |
127 |
ctataatctcttttcaaaatcattttcaagccaaagacagtgatattgttgttgcaagtttaccaaaatcaggcacaacttggttgagagcacttacatt |
226 |
Q |
| |
|
|||||||||||||||||||| |||||||||| ||||| |||||| ||||| |||| | | ||||||||||| ||||| ||||||| ||| || || || |
|
|
| T |
1618563 |
ctataatctcttttcaaaatgattttcaagctaaagatagtgatgttgttattgcctctatgccaaaatcaggaacaacatggttgaaagccctaacctt |
1618464 |
T |
|
| Q |
227 |
tgcaattgtaaatcgcaatcaatactctt---ttgagaatcatccattacttaaa |
278 |
Q |
| |
|
||||||| | |||||| |||| | |||| | ||||||||||||||||||||| |
|
|
| T |
1618463 |
tgcaattattaatcgccatcatttttcttccctagagaatcatccattacttaaa |
1618409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 127 - 247
Target Start/End: Complemental strand, 1627128 - 1627008
Alignment:
| Q |
127 |
ctataatctcttttcaaaatcattttcaagccaaagacagtgatattgttgttgcaagtttaccaaaatcaggcacaacttggttgagagcacttacatt |
226 |
Q |
| |
|
||||||||||||||||||| || |||||||| || || |||||| | |||||||| | | | ||||||||||| ||||| ||||||| ||| || || || |
|
|
| T |
1627128 |
ctataatctcttttcaaaaccactttcaagctaaggatagtgatgtggttgttgccactgttccaaaatcaggaacaacatggttgaaagccctaacctt |
1627029 |
T |
|
| Q |
227 |
tgcaattgtaaatcgcaatca |
247 |
Q |
| |
|
||| ||| | |||||| |||| |
|
|
| T |
1627028 |
tgccattattaatcgccatca |
1627008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 580 - 677
Target Start/End: Complemental strand, 1626669 - 1626572
Alignment:
| Q |
580 |
ttggttcattttgggagcataatttaggttacttgaaagaaagtatgactaggccagacaaagttttatttttgaaatatgaagaacttaaagaagat |
677 |
Q |
| |
|
||||| |||||||||| |||| || ||||||||||| || || | |||| ||| |||| ||||||| |||||||||||||| |||||||||||| |
|
|
| T |
1626669 |
ttggtccattttgggaccatatgttgggttacttgaaggagagcaaagctagaccaaacaagattttattcttgaaatatgaagatcttaaagaagat |
1626572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 136 - 211
Target Start/End: Complemental strand, 3653267 - 3653192
Alignment:
| Q |
136 |
cttttcaaaatcattttcaagccaaagacagtgatattgttgttgcaagtttaccaaaatcaggcacaacttggtt |
211 |
Q |
| |
|
|||| ||||| ||||| ||||| ||||| |||||| || ||||||||| ||||||||||||||||||||||||| |
|
|
| T |
3653267 |
ctttccaaaagcatttccaagctaaagaaagtgatgtttttgttgcaaccgtaccaaaatcaggcacaacttggtt |
3653192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1172 times since January 2019
Visitors: 2389