View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0214_low_205 (Length: 205)

Name: NF0214_low_205
Description: NF0214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0214_low_205
NF0214_low_205
[»] chr5 (11 HSPs)
chr5 (1-103)||(39168829-39168931)
chr5 (1-103)||(39399842-39399944)
chr5 (1-103)||(40418266-40418368)
chr5 (1-103)||(39879797-39879899)
chr5 (1-103)||(38987688-38987790)
chr5 (1-103)||(39726401-39726503)
chr5 (19-102)||(3299537-3299620)
chr5 (19-102)||(3392430-3392513)
chr5 (31-96)||(1163693-1163758)
chr5 (19-96)||(1849969-1850046)
chr5 (1-100)||(40102209-40102308)
[»] chr4 (2 HSPs)
chr4 (1-102)||(25912292-25912393)
chr4 (30-97)||(44444771-44444838)


Alignment Details
Target: chr5 (Bit Score: 103; Significance: 2e-51; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 39168829 - 39168931
Alignment:
Q  1 cgtgtggaagattttggaaataatgacacaacttttcaaatcaaaactcatctaggtcatattttaaaatccggtgactatgctcttggttatgacttgt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39168829 cgtgtggaagattttggaaataatgacacaacttttcaaatcaaaactcatctaggtcatattttaaaatccggtgactatgctcttggttatgacttgt 39168928  T
Q  101 ctg 103  Q
    |||    
T  39168929 ctg 39168931  T

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Target: chr5; HSP #2
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 39399842 - 39399944
Alignment:
Q  1 cgtgtggaagattttggaaataatgacacaacttttcaaatcaaaactcatctaggtcatattttaaaatccggtgactatgctcttggttatgacttgt 100  Q
    ||||||||| |||||||||||||||||||||||||||||||||  |||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  39399842 cgtgtggaaaattttggaaataatgacacaacttttcaaatcaggactcatcttggtcatattttaaaatccggtgactatgctcttggttatgacttgt 39399941  T
Q  101 ctg 103  Q
    |||    
T  39399942 ctg 39399944  T

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Target: chr5; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 40418266 - 40418368
Alignment:
Q  1 cgtgtggaagattttggaaataatgacacaacttttcaaatcaaaactcatctaggtcatattttaaaatccggtgactatgctcttggttatgacttgt 100  Q
    |||||| ||||| ||||||||||||||||||||||||||||||  |||||||| |||| |||||||||| |||||||| ||||||||||||||||| |||    
T  40418266 cgtgtgaaagatattggaaataatgacacaacttttcaaatcaggactcatcttggtcgtattttaaaacccggtgaccatgctcttggttatgacctgt 40418365  T
Q  101 ctg 103  Q
    |||    
T  40418366 ctg 40418368  T

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Target: chr5; HSP #4
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 39879797 - 39879899
Alignment:
Q  1 cgtgtggaagattttggaaataatgacacaacttttcaaatcaaaactcatctaggtcatattttaaaatccggtgactatgctcttggttatgacttgt 100  Q
    |||||| |||||  |||||||||||||||||||||||||||||  |||||||| |||| |||||||||| |||||||| ||||||||||||||||| |||    
T  39879797 cgtgtgaaagatactggaaataatgacacaacttttcaaatcaggactcatcttggtcgtattttaaaacccggtgaccatgctcttggttatgacctgt 39879896  T
Q  101 ctg 103  Q
    |||    
T  39879897 ctg 39879899  T

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Target: chr5; HSP #5
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 38987688 - 38987790
Alignment:
Q  1 cgtgtggaagattttggaaataatgacacaacttttcaaatcaaaactcatctaggtcatattttaaaatccggtgactatgctcttggttatgacttgt 100  Q
    |||||| |||||  |||||||||||||||||||||||||||||  |||||||| |||| ||| |||||| |||||||| ||||||||||||||||| |||    
T  38987688 cgtgtgaaagatactggaaataatgacacaacttttcaaatcaggactcatctcggtcgtatcttaaaacccggtgaccatgctcttggttatgacctgt 38987787  T
Q  101 ctg 103  Q
    |||    
T  38987788 ctg 38987790  T

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Target: chr5; HSP #6
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 39726401 - 39726503
Alignment:
Q  1 cgtgtggaagattttggaaataatgacacaacttttcaaatcaaaactcatctaggtcatattttaaaatccggtgactatgctcttggttatgacttgt 100  Q
    |||||| |||||  |||||||||||||||||||||||||||||  |||||||| |||| ||| |||||| |||||||| ||||||||||||||||| |||    
T  39726401 cgtgtgaaagatactggaaataatgacacaacttttcaaatcaggactcatctcggtcgtatcttaaaacccggtgaccatgctcttggttatgacctgt 39726500  T
Q  101 ctg 103  Q
    |||    
T  39726501 ctg 39726503  T

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Target: chr5; HSP #7
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 19 - 102
Target Start/End: Original strand, 3299537 - 3299620
Alignment:
Q  19 aataatgacacaacttttcaaatcaaaactcatctaggtcatattttaaaatccggtgactatgctcttggttatgacttgtct 102  Q
    |||||| ||||||||||||||||||| |||||||| |||| |||||||||| |||||||| ||||||||||||||||| |||||    
T  3299537 aataatcacacaacttttcaaatcaagactcatcttggtcgtattttaaaacccggtgaccatgctcttggttatgacctgtct 3299620  T

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Target: chr5; HSP #8
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 19 - 102
Target Start/End: Original strand, 3392430 - 3392513
Alignment:
Q  19 aataatgacacaacttttcaaatcaaaactcatctaggtcatattttaaaatccggtgactatgctcttggttatgacttgtct 102  Q
    |||||| ||||||||||||||||||| |||||||| |||| |||||||||| |||||||| ||||||||||||||||| |||||    
T  3392430 aataatcacacaacttttcaaatcaagactcatcttggtcgtattttaaaacccggtgaccatgctcttggttatgacctgtct 3392513  T

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Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 31 - 96
Target Start/End: Complemental strand, 1163758 - 1163693
Alignment:
Q  31 acttttcaaatcaaaactcatctaggtcatattttaaaatccggtgactatgctcttggttatgac 96  Q
    |||||||||||||  |||||||| |||| |||||||||| |||||||| |||||||||||||||||    
T  1163758 acttttcaaatcaggactcatcttggtcgtattttaaaacccggtgaccatgctcttggttatgac 1163693  T

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Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 19 - 96
Target Start/End: Original strand, 1849969 - 1850046
Alignment:
Q  19 aataatgacacaacttttcaaatcaaaactcatctaggtcatattttaaaatccggtgactatgctcttggttatgac 96  Q
    |||||| ||||||||||||||||||  ||||||||  ||| |||||||||| | |||||| |||||||||||||||||    
T  1849969 aataatcacacaacttttcaaatcaggactcatcttagtcgtattttaaaacctggtgaccatgctcttggttatgac 1850046  T

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Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 40102308 - 40102209
Alignment:
Q  1 cgtgtggaagattttggaaataatgacacaacttttcaaatcaaaactcatctaggtcatattttaaaatccggtgactatgctcttggttatgacttgt 100  Q
    |||||| ||||||||||||| |||||||| |  ||| | ||||| |||||||| ||| || |||| ||||  |||||| ||||| |||||||||||||||    
T  40102308 cgtgtgaaagattttggaaagaatgacacgagatttaatatcaagactcatctgggttatcttttgaaatttggtgaccatgcttttggttatgacttgt 40102209  T

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Target: chr4 (Bit Score: 58; Significance: 1e-24; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 25912393 - 25912292
Alignment:
Q  1 cgtgtggaagattttggaaataatgacacaacttttcaaatcaaaactcatctaggtcatattttaaaatccggtgactatgctcttggttatgacttgt 100  Q
    |||||| ||||| ||||||||||||||||||||||||||||||  |||||||| |||| |||| ||||| ||| |||| ||||||||||||||||| |||    
T  25912393 cgtgtgaaagatattggaaataatgacacaacttttcaaatcaggactcatcttggtcgtattctaaaacccgatgaccatgctcttggttatgacctgt 25912294  T
Q  101 ct 102  Q
    ||    
T  25912293 ct 25912292  T

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Target: chr4; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 30 - 97
Target Start/End: Complemental strand, 44444838 - 44444771
Alignment:
Q  30 aacttttcaaatcaaaactcatctaggtcatattttaaaatccggtgactatgctcttggttatgact 97  Q
    ||||||||||||||| |||||||| |||| |||||||||| | |||||||||||||||||||||||||    
T  44444838 aacttttcaaatcaagactcatcttggtcgtattttaaaacctggtgactatgctcttggttatgact 44444771  T

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