View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0214_low_206 (Length: 205)
Name: NF0214_low_206
Description: NF0214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0214_low_206 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 128; Significance: 2e-66; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 12220019 - 12219872
Alignment:
| Q |
1 |
agtgaggcttccttaagtgggaaggaaatgttaaaatgtagaataaatctacccaatctaatggctcatcttcatacacatcaaccattttaccaaaccc |
100 |
Q |
| |
|
||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
12220019 |
agtgaggcttccttaagtgggaaggaagtgtgaaaatgtagaacaaatctacccaatctaatggttcatcttcatacacatcaaccattttaccaaaccc |
12219920 |
T |
|
| Q |
101 |
ttccatatctcctggtttttgccaaagcttacttttctcttccattga |
148 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
12219919 |
ttccatatctcctggtttttgccaaagcttactcttctcttccattga |
12219872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1327 times since January 2019
Visitors: 2391