View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0214_low_24 (Length: 487)
Name: NF0214_low_24
Description: NF0214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0214_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 409; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 29 - 457
Target Start/End: Original strand, 42117151 - 42117579
Alignment:
| Q |
29 |
aggttgatcaggccgtaacccccgaaccaaagcgatcaagatttatgccccgataggttgggctcataacttccaatagggatattttcatgatttctaa |
128 |
Q |
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| T |
42117151 |
aggttgatcgggccgtaacccccgaaccaaagcgatcaagatttatgccccgataggttgggctcataactcccaatagggatattttcatgatttctaa |
42117250 |
T |
|
| Q |
129 |
aggcatgtgagcaattgaagagacctattgagaaatcttaatacacaaggggtaaaattatgtcatgtaatgttgggctcatagatagctaataggtaca |
228 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42117251 |
aggcatgtgagcaattgaagggacctattgagaaatcttaatacacaaggggtaaagttatgtcatgtaatgttgggctcatagatagctaataggtaca |
42117350 |
T |
|
| Q |
229 |
agttatgggttgctctgctatcacaatttatccacttattcttcttcccttcatcctgtttatctcaacctctcatcttcaaaggtgaaccaacaaagct |
328 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42117351 |
agtaatgggttgctctgctatcacaatttatccacttattcttcttcccttcatcctgtttatctcaacctctcatcttcaaaggtgaaccaacaaagct |
42117450 |
T |
|
| Q |
329 |
gcaaactctttaaaccaagccatatatgattaggtcgatctcctctacatcaattatagtcttcaatgctttagaccttgtctcttcttcactatataag |
428 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42117451 |
gcaaactctttaaaccaagccatatatgattaggtcgatctcctctacatcaattatagtcttcaatgctttagaccttgtctcttcttcactatataag |
42117550 |
T |
|
| Q |
429 |
cctcttttacataacatgaacaaaacaaa |
457 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
42117551 |
cctcttttacataacatgaacaaaacaaa |
42117579 |
T |
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