View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0214_low_26 (Length: 480)
Name: NF0214_low_26
Description: NF0214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0214_low_26 |
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Alignment Details
Target: chr5 (Bit Score: 431; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 28 - 470
Target Start/End: Complemental strand, 12550645 - 12550203
Alignment:
| Q |
28 |
catacgtaccttctgcaaaggttctgcatcaggttctacaattttaataaaatgaataaacctgcaagcaacattaataattgcaccacttgattatttg |
127 |
Q |
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| T |
12550645 |
catacgtaccttctgcaaaggatctgcatcaggttctacaattttaataaaatgaataaacctgcaagcaacattaataattgcaccacttgatcatttg |
12550546 |
T |
|
| Q |
128 |
ttaatcatcttagacctcagaattagtcactctactttctggtatagatttttatggccaaccttaatattcaaagatttggtaaataaagatttaaaaa |
227 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12550545 |
ttaatcatcttagacctcagaattagtcactctactttctggtatagatttttatggccaaccttaatattcaaagatttggtaaataaagatttaaaaa |
12550446 |
T |
|
| Q |
228 |
gaaattctgagttgcttgttttctcatcaatggtgtcacaacttttgtcattttctttttatttgcatgcatcggatacattgttattaccaaccaacct |
327 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
12550445 |
gaaattctgagttgcttgttttctcatcaatggtgtcacaacttttgtcattttctttttatttgcatgcatcgaatacattgttattaccaaccaacct |
12550346 |
T |
|
| Q |
328 |
ctgcatcattgataattctctcaagcattaagcagtctccacctgctcccaatccatcaatgttgtcttcattgtagggttaaccttaatcacacctttt |
427 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12550345 |
ctgcatcattgataattctctcaagcattaagcagtctccacctgctcccaatccatcaatgttgtcttcattgtagggttaaccttaatcacacctttt |
12550246 |
T |
|
| Q |
428 |
tcattcagatttctcagacgccaacacagtgtttcctcctatg |
470 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12550245 |
tcattcagatttctcagacgccaacacagtgtttcctcctatg |
12550203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 28 - 185
Target Start/End: Complemental strand, 9462358 - 9462194
Alignment:
| Q |
28 |
catacgtaccttctgcaaaggtt-ctgcatcaggttctacaattttaataaaatgaataaacctgcaagcaacattaataattgcaccacttgattattt |
126 |
Q |
| |
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||||| ||||||||||| || || ||||||||||| ||||| ||||||| |||||||||||||||||||||||||||||||||| | | |||||||||| |
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| T |
9462358 |
catacataccttctgcatagttttctgcatcaggtgctacagttttaattaaatgaataaacctgcaagcaacattaataattgttcaagttgattattt |
9462259 |
T |
|
| Q |
127 |
gttaatcatctt------agacctcagaattagtcactctactttctggtatagatttttatggc |
185 |
Q |
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|||||||||||| ||| |||||||||| |||||||||||||||||||||| |||| |||| |
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| T |
9462258 |
gttaatcatcttagtttgagatctcagaattattcactctactttctggtatagacttttctggc |
9462194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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