View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0214_low_27 (Length: 473)
Name: NF0214_low_27
Description: NF0214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0214_low_27 |
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Alignment Details
Target: chr4 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 30 - 467
Target Start/End: Complemental strand, 56282807 - 56282375
Alignment:
| Q |
30 |
cttggcacttcttagcctctcttttaaactatgcatcatcacataatccttaccactttttgnnnnnnnnnnnnnnnnnnngcctttcatttatcaatag |
129 |
Q |
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| T |
56282807 |
cttggcacttcttagcctctcttttaaactatgcatcatcacataacccttaccactttttgtatatatatatatat----gcctttcatttatcaatag |
56282712 |
T |
|
| Q |
130 |
tcttaaatctcataaaagaaaaccagccacaatgagcaggagaactgtaccttgcagccgatcttggtgagtgctaaattaaataccaaccatttcaatc |
229 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
56282711 |
tcttaaatctcataaaagaaaaccagccacaatgagcaggagaactgtaccttgcagccgatcttggtgagtgctaaattaaatatcaaccatttcaatc |
56282612 |
T |
|
| Q |
230 |
aattaaatgtttgttttcatatataattgttgaagtgatgatgatgaatttcttcttgtaaaggtcaattagtgaggactctcttaaaaggtatgtacag |
329 |
Q |
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||||||||||| || |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
56282611 |
aattaaatgtt-gtgttcatatataattgttgaagtgatgatgatgaatttcttcttttaaaggtcaattagtgaggactctcttaaaaggtatgtacag |
56282513 |
T |
|
| Q |
330 |
tttgcaagtgaaagttgcatacaagagttactagcagcttcggacacaaacagagtaaactcaaacaatgatgaatggaaagtgctcacttttgataatg |
429 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56282512 |
tttgcaagtgaaagttgcatacaagagttactagcagcttcggacacaaacagaggaaactcaaacaatgatgaatggaaagtgctcacttttgataatg |
56282413 |
T |
|
| Q |
430 |
gagttgagatatcaaaacgaaggtcaggttcatctcac |
467 |
Q |
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| T |
56282412 |
gagttgagatatcaaaacgaaggtcaggttcatttcac |
56282375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 392 - 452
Target Start/End: Complemental strand, 38476927 - 38476865
Alignment:
| Q |
392 |
aaacaatgatgaatggaaagtgctcac--ttttgataatggagttgagatatcaaaacgaagg |
452 |
Q |
| |
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|||||||||| ||||||||||| |||| |||||||||| |||||||||||||||||| |||| |
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| T |
38476927 |
aaacaatgattaatggaaagtggtcacacttttgataattgagttgagatatcaaaacaaagg |
38476865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 317 - 394
Target Start/End: Complemental strand, 34572209 - 34572132
Alignment:
| Q |
317 |
aaggtatgtacagtttgcaagtgaaagttgcatacaagagttactagcagcttcggacacaaacagagtaaactcaaa |
394 |
Q |
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||||||||| ||||| || | |||| |||||||||||||||| ||| ||||| ||||||||||||| |||| |||| |
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| T |
34572209 |
aaggtatgtgcagttcgcgactgaatattgcatacaagagttattagaagcttatgacacaaacagaggaaacacaaa |
34572132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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