View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0214_low_28 (Length: 473)

Name: NF0214_low_28
Description: NF0214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0214_low_28
NF0214_low_28
[»] chr7 (1 HSPs)
chr7 (88-473)||(35831054-35831437)
[»] chr5 (3 HSPs)
chr5 (382-446)||(18898593-18898657)
chr5 (377-431)||(7873062-7873116)
chr5 (377-430)||(34583692-34583745)
[»] chr2 (1 HSPs)
chr2 (377-430)||(31464765-31464818)
[»] chr3 (2 HSPs)
chr3 (394-447)||(39553843-39553896)
chr3 (377-432)||(39279726-39279781)
[»] chr4 (1 HSPs)
chr4 (394-450)||(19413254-19413310)
[»] chr8 (3 HSPs)
chr8 (377-444)||(6020624-6020691)
chr8 (377-443)||(6021815-6021881)
chr8 (377-446)||(6019552-6019621)
[»] chr6 (1 HSPs)
chr6 (394-456)||(27870950-27871012)


Alignment Details
Target: chr7 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 88 - 473
Target Start/End: Complemental strand, 35831437 - 35831054
Alignment:
Q  88 ccaaggatggtgaacttcccataagccttgtgctcttagcttcttctcagaaacatgcactctgtctaaaaattccacgtaggaaacttctgataggaag 187  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35831437 ccaaggatggtgaacttcccataagccttgtgctcttagcttcttctcagaaacatgcactctgtctaaaaattccacgtaggaaacttctgataggaag 35831338  T
Q  188 agtgtgggtggaatataactcaattgtgacagtaggtgatcaacatcctgcatttaaatgagtnnnnnnntgttaagttgttcacagaactaatgctgta 287  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||    
T  35831337 agtgtgggtggaatataactcaattgtgacagtaggtgatcaacatcctgcatttaaatgagtaaaaaaatgttaagttgttcacagaactaatgctgta 35831238  T
Q  288 aacctgaatatgagattgagtgcatatttggattgacggtgagaatgaggaaatcacggcgggccaccacaatttatttcggnnnnnnntacactttaga 387  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||    
T  35831237 aacctgaatatgagattgagtgcatatttggattgacggtgagaatgaggaaatcacggcgggccaccacaatttatttcggaaaaaaatacactttaga 35831138  T
Q  388 gcttctacaaaatcacagtgtcaccgtaatttcatcaaactcaccatcaatccaaacatacacggaataagattattggcgtgtct 473  Q
    ||||||||||||||||||||||||||||||||| ||  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  35831137 gcttctacaaaatcacagtgtcaccgtaatttcgtc--actcaccatcaatccaaacatacacggaataagattattggcgtgtct 35831054  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 382 - 446
Target Start/End: Complemental strand, 18898657 - 18898593
Alignment:
Q  382 tttagagcttctacaaaatcacagtgtcaccgtaatttcatcaaactcaccatcaatccaaacat 446  Q
    ||||||||||| |||||||||  |||||||||| |||||||||| |||||| |||||||||||||    
T  18898657 tttagagcttcaacaaaatcaaggtgtcaccgtgatttcatcaagctcaccgtcaatccaaacat 18898593  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 377 - 431
Target Start/End: Complemental strand, 7873116 - 7873062
Alignment:
Q  377 tacactttagagcttctacaaaatcacagtgtcaccgtaatttcatcaaactcac 431  Q
    |||| |||| |||||| |||||||||  ||||||||||||||| |||||||||||    
T  7873116 tacattttatagcttcaacaaaatcatggtgtcaccgtaattttatcaaactcac 7873062  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 430
Target Start/End: Complemental strand, 34583745 - 34583692
Alignment:
Q  377 tacactttagagcttctacaaaatcacagtgtcaccgtaatttcatcaaactca 430  Q
    ||||||||||| |||| || |||||||  ||||||||||||| |||||||||||    
T  34583745 tacactttagaacttcaacgaaatcacgatgtcaccgtaattacatcaaactca 34583692  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 377 - 430
Target Start/End: Complemental strand, 31464818 - 31464765
Alignment:
Q  377 tacactttagagcttctacaaaatcacagtgtcaccgtaatttcatcaaactca 430  Q
    ||||||||||| |||| |||||||||| |||||||||| |||||||||||||||    
T  31464818 tacactttagaacttcaacaaaatcaccgtgtcaccgtgatttcatcaaactca 31464765  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 394 - 447
Target Start/End: Original strand, 39553843 - 39553896
Alignment:
Q  394 acaaaatcacagtgtcaccgtaatttcatcaaactcaccatcaatccaaacata 447  Q
    ||||||||||||||||||||| |||| | |||||||||  ||||||||||||||    
T  39553843 acaaaatcacagtgtcaccgtgattttaccaaactcactgtcaatccaaacata 39553896  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 377 - 432
Target Start/End: Original strand, 39279726 - 39279781
Alignment:
Q  377 tacactttagagcttctacaaaatcacagtgtcaccgtaatttcatcaaactcacc 432  Q
    ||||||||||| |||| |||||||||| |||||||||| ||||| ||||| |||||    
T  39279726 tacactttagaacttcaacaaaatcaccgtgtcaccgtgatttcgtcaaaatcacc 39279781  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 394 - 450
Target Start/End: Complemental strand, 19413310 - 19413254
Alignment:
Q  394 acaaaatcacagtgtcaccgtaatttcatcaaactcaccatcaatccaaacatacac 450  Q
    ||||||||||||||||||||| ||||| ||| ||||||||| | |||||||| ||||    
T  19413310 acaaaatcacagtgtcaccgtgatttcgtcacactcaccatgattccaaacagacac 19413254  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 377 - 444
Target Start/End: Complemental strand, 6020691 - 6020624
Alignment:
Q  377 tacactttagagcttctacaaaatcacagtgtcaccgtaatttcatcaaactcaccatcaatccaaac 444  Q
    |||||||||||||||| |||||||||  ||| |||||||||||  ||| ||| |||| ||||||||||    
T  6020691 tacactttagagcttcaacaaaatcatggtggcaccgtaattttgtcagactaaccaccaatccaaac 6020624  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 377 - 443
Target Start/End: Complemental strand, 6021881 - 6021815
Alignment:
Q  377 tacactttagagcttctacaaaatcacagtgtcaccgtaatttcatcaaactcaccatcaatccaaa 443  Q
    |||||||||||||||| || ||||||  ||| ||| |||||||  |||||||||||| |||||||||    
T  6021881 tacactttagagcttcaaccaaatcatggtggcacggtaattttgtcaaactcaccaacaatccaaa 6021815  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 446
Target Start/End: Complemental strand, 6019621 - 6019552
Alignment:
Q  377 tacactttagagcttctacaaaatcacagtgtcaccgtaatttcatcaaactcaccatcaatccaaacat 446  Q
    ||||||||| | |||| ||||||||||  |||||||   ||||| || ||||||||||||||||||||||    
T  6019621 tacactttataacttcaacaaaatcacgttgtcaccacgatttcgtccaactcaccatcaatccaaacat 6019552  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 394 - 456
Target Start/End: Original strand, 27870950 - 27871012
Alignment:
Q  394 acaaaatcacagtgtcaccgtaatttcatcaaactcaccatcaatccaaacatacacggaata 456  Q
    |||||||||  |||||||||| |||| |||||||||||| |  |||||||||||||| |||||    
T  27870950 acaaaatcatggtgtcaccgtgattttatcaaactcacctttcatccaaacatacaccgaata 27871012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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