View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0214_low_29 (Length: 471)
Name: NF0214_low_29
Description: NF0214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0214_low_29 |
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Alignment Details
Target: chr4 (Bit Score: 342; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 30 - 371
Target Start/End: Complemental strand, 55907685 - 55907344
Alignment:
| Q |
30 |
cgtaagccagtagcggggatgataggttggttggagagattgagcgaagtgatatttaatggaaaaggtatttggcagagaagtgcgttgaggtcaccgt |
129 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55907685 |
cgtaagccagtagcggggatgataggttggttggagagattgagcgaagtgatatttaatggaaaaggtatttggcagagaagtgcgttgaggtcaccgt |
55907586 |
T |
|
| Q |
130 |
tgtaggaactaagatcaaggtaggtaatgtaggtgaacctttggaagagacgagggaggaaagtgcaagtttgatagaggataattagagagaatcgaag |
229 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55907585 |
tgtaggaactaagatcaaggtaggtaatgtaggtgaacctttggaagagacgagggaggaaagtgcaagtttgatagaggataattagagagaatcgaag |
55907486 |
T |
|
| Q |
230 |
agtgttggtgactgagagaaactgtttggagacggttgagagagatttcaagtagcgaggattgtcgttgatcagaaatgtgaagacatattcccaacaa |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55907485 |
agtgttggtgactgagagaaactgtttggagacggttgagagagatttcaagtagcgaggattgtcgttgatcagaaatgtgaagacatattcccaacaa |
55907386 |
T |
|
| Q |
330 |
ttatcagataaataacaattatttacagctgtcacagttgtg |
371 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
55907385 |
ttatcagataaataacaattatttacagctgtcacagttgtg |
55907344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 396 - 461
Target Start/End: Complemental strand, 55907310 - 55907245
Alignment:
| Q |
396 |
gtgtttctgaaagcaaccagtttactcaacctcattgttgttcttcttcttcttttactttctgtg |
461 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
55907310 |
gtgtttctgaaagcaaccagtttactcaacctcattgttgttgttcttcttcttttactttctgtg |
55907245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 55 - 189
Target Start/End: Original strand, 532813 - 532947
Alignment:
| Q |
55 |
gttggttggagagattgagcgaagtgatatttaatggaaaaggtatttggcagagaagtgcgttgaggtcaccgttgtaggaactaagatcaaggtaggt |
154 |
Q |
| |
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||||||| ||||||||||| || |||| || || |||||| ||||||||||||||| |||||||||||||||||| |||| |||||| |||| |
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| T |
532813 |
gttggttagagagattgagtgatgtgagtttgaagggaaaatatatttggcagagaagcctattgaggtcaccgttgtagcttgtaaggtcaagggaggt |
532912 |
T |
|
| Q |
155 |
aatgtaggtgaacctttggaagagacgagggagga |
189 |
Q |
| |
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| || |||||| || ||||||| |||||||||| |
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| T |
532913 |
gaggttggtgaatctacggaagaggcgagggagga |
532947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 319; Significance: 1e-180; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 33 - 371
Target Start/End: Complemental strand, 1036424 - 1036086
Alignment:
| Q |
33 |
aagccagtagcggggatgataggttggttggagagattgagcgaagtgatatttaatggaaaaggtatttggcagagaagtgcgttgaggtcaccgttgt |
132 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
1036424 |
aagccagtagcggggatgataggttggttggagagattgagcgaagtgatatttaatggaaaaggtatttggcagagaagcgcgttgaggtcaccgttgt |
1036325 |
T |
|
| Q |
133 |
aggaactaagatcaaggtaggtaatgtaggtgaacctttggaagagacgagggaggaaagtgcaagtttgatagaggataattagagagaatcgaagagt |
232 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
1036324 |
aggaactaagatcaaggtaggtaatgttggtgaacctttggaagagacgagggaggaaagtgcaagtttgatagaggatagttagagagaatcgaagagt |
1036225 |
T |
|
| Q |
233 |
gttggtgactgagagaaactgtttggagacggttgagagagatttcaagtagcgaggattgtcgttgatcagaaatgtgaagacatattcccaacaatta |
332 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| |
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| T |
1036224 |
gttggtgactgagagaaactgtttggagacggttgagagagatttcaagtagcgaggattgtcattgatcagaaatgtgaagacatattccgaacaatta |
1036125 |
T |
|
| Q |
333 |
tcagataaataacaattatttacagctgtcacagttgtg |
371 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1036124 |
tcagataaataacaattatttacagctgtcacagttgtg |
1036086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 30 - 229
Target Start/End: Complemental strand, 1036621 - 1036422
Alignment:
| Q |
30 |
cgtaagccagtagcggggatgataggttggttggagagattgagcgaagtgatatttaatggaaaaggtatttggcagagaagtgcgttgaggtcaccgt |
129 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |
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|
| T |
1036621 |
cgtaagccagtagcggggatgataggttggttggagagattgagcgaagtgatatttaatggaaaaggtatttggtagagaagcgcgttgaggtcaccgt |
1036522 |
T |
|
| Q |
130 |
tgtaggaactaagatcaaggtaggtaatgtaggtgaacctttggaagagacgagggaggaaagtgcaagtttgatagaggataattagagagaatcgaag |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
1036521 |
tgtaggaactaagatcaaggtaggtaatgttggtgaacctttggaagagacgagggaggaaagtgcaagtttgatagaggatagttagagagaatcgaag |
1036422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 396 - 461
Target Start/End: Complemental strand, 1036052 - 1035987
Alignment:
| Q |
396 |
gtgtttctgaaagcaaccagtttactcaacctcattgttgttcttcttcttcttttactttctgtg |
461 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1036052 |
gtgtttctgaaagcaaccagtttattcaacctcattgttgttcttcttcttcttttactttctgtg |
1035987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 234 - 285
Target Start/End: Complemental strand, 44575224 - 44575173
Alignment:
| Q |
234 |
ttggtgactgagagaaactgtttggagacggttgagagagatttcaagtagc |
285 |
Q |
| |
|
||||||| ||||||||||||||| |||||| | |||||||| |||||||||| |
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|
| T |
44575224 |
ttggtgattgagagaaactgttttgagacgatggagagagacttcaagtagc |
44575173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 216 - 284
Target Start/End: Complemental strand, 41900315 - 41900247
Alignment:
| Q |
216 |
agagagaatcgaagagtgttggtgactgagagaaactgtttggagacggttgagagagatttcaagtag |
284 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
41900315 |
agagagaatcgaagagtgttggtgatggagagaaactgtttggagacgagtgagagagatttcaagtag |
41900247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 233 - 286
Target Start/End: Original strand, 6403848 - 6403901
Alignment:
| Q |
233 |
gttggtgactgagagaaactgtttggagacggttgagagagatttcaagtagcg |
286 |
Q |
| |
|
|||||||| ||||| ||||||||||| |||| ||||||||||||||||||||| |
|
|
| T |
6403848 |
gttggtgatagagaggaactgtttggatacggctgagagagatttcaagtagcg |
6403901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 216 - 281
Target Start/End: Complemental strand, 513493 - 513428
Alignment:
| Q |
216 |
agagagaatcgaagagtgttggtgactgagagaaactgtttggagacggttgagagagatttcaag |
281 |
Q |
| |
|
||||||||||| ||| ||||||||| ||||| |||||||| ||||||| ||||||||||||||| |
|
|
| T |
513493 |
agagagaatcggagattgttggtgatggagagtaactgttttgagacggcggagagagatttcaag |
513428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 222 - 262
Target Start/End: Complemental strand, 10168865 - 10168825
Alignment:
| Q |
222 |
aatcgaagagtgttggtgactgagagaaactgtttggagac |
262 |
Q |
| |
|
||||||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
10168865 |
aatcgaagagtgttggtgatggagaggaactgtttggagac |
10168825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 222 - 262
Target Start/End: Complemental strand, 10176390 - 10176350
Alignment:
| Q |
222 |
aatcgaagagtgttggtgactgagagaaactgtttggagac |
262 |
Q |
| |
|
||||||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
10176390 |
aatcgaagagtgttggtgatggagaggaactgtttggagac |
10176350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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