View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0214_low_30 (Length: 469)
Name: NF0214_low_30
Description: NF0214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0214_low_30 |
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Alignment Details
Target: chr3 (Bit Score: 180; Significance: 5e-97; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 277 - 456
Target Start/End: Complemental strand, 52993604 - 52993425
Alignment:
| Q |
277 |
tgggggaccaagatgttgtttggaaaagcaacaagagggggtgtaaaacgaaaataggttggctcctagaggcactaaaaaagagtcctagactctgtga |
376 |
Q |
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| T |
52993604 |
tgggggaccaagatgttgtttggaaaagcaacaagagggggtgtaaaacgaaaataggttggctcctagaggcactaaaaaagagtcctagactctgtga |
52993505 |
T |
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| Q |
377 |
ttagtccttacaaccccacatgactccgttttttctatctcctgcctaagctattctcatgataaatacccaccacgttc |
456 |
Q |
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| T |
52993504 |
ttagtccttacaaccccacatgactccgttttttctatctcctgcctaagctattctcatgataaatacccaccacgttc |
52993425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 114 - 225
Target Start/End: Complemental strand, 52993762 - 52993651
Alignment:
| Q |
114 |
ttgtaatggtaggatatttcgtccgtacagagctgaaatttattgttatatatgatatatattgacaagttatagttaaagaaaagttagaaaaccccat |
213 |
Q |
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| T |
52993762 |
ttgtaatggtaggatatttcgtccgtacagagctgaaatttattgttatatatgatatatattgacaagttatagttaaagaaaagttagaaaaccccat |
52993663 |
T |
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| Q |
214 |
tcctttataatt |
225 |
Q |
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| T |
52993662 |
tcctttataatt |
52993651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 30 - 85
Target Start/End: Complemental strand, 52993858 - 52993803
Alignment:
| Q |
30 |
aaaatttaaacattatcaaatgtttttataattttgtttaggatatctcgtcatgc |
85 |
Q |
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| T |
52993858 |
aaaatttaaacatgatcaaatgtttttataattttgtttaggatatctcgtcatgc |
52993803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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