View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0214_low_31 (Length: 468)
Name: NF0214_low_31
Description: NF0214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0214_low_31 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 361; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 15 - 410
Target Start/End: Complemental strand, 39474277 - 39473881
Alignment:
| Q |
15 |
gaaccctggagaaatggtatttcgacacacaatttgaaagtaaaagtcaacaacaatgaaatggttaacgtaattaaaatatttgtttaattacattcag |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
39474277 |
gaaccctggagaaatggtatttcgacacacaatttgaaagtaaaagtcgacaacaattaaatggttaacgtaattaaaatatttgtttaattacgttcag |
39474178 |
T |
|
| Q |
115 |
tggatggttaatgaatgtaatattcactcaatgaaat-aaccgcaattttgaaggtcagaaaccatgattttcaaatgtatacttgaacctaaatcgttg |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
39474177 |
tggatggttaatgaatgtaatattcactcaatgaaattaactgcaattttgaaggtcagaaaccatgattttcaaatgtatacttgaacctaaatcattg |
39474078 |
T |
|
| Q |
214 |
ttaatgaatatcacgtgtatttgagcacctaaaatcatgtacttaatcatttaagttgtcgttgaattttaatgtcaaatttgtgtgtcaaattaatata |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39474077 |
ttaatgaatatcacgtgtatttgagcacctaaaatcatgtacttaatcatttaagttgtcgttgaattttaatgtcaaatttgtgtgtcaaattaatata |
39473978 |
T |
|
| Q |
314 |
acaggctaccagagagttgaagaaaacaccaaagagttaggttacagatgagaagaaaacatcacatctttctggtttgaattcacaggctaccaga |
410 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |
|
|
| T |
39473977 |
acaggctaccagagagttgaagaaaacaccaaagagttaggttacagatgagaagaaaacatcacatctctctggtttgaattcacaggataccaga |
39473881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 183 - 243
Target Start/End: Original strand, 43432484 - 43432544
Alignment:
| Q |
183 |
tttcaaatgtatacttgaacctaaatcgttgttaatgaatatcacgtgtatttgagcacct |
243 |
Q |
| |
|
|||||| |||||| |||||| || ||||| |||||||||||||| || ||||||| ||||| |
|
|
| T |
43432484 |
tttcaagtgtatatttgaacatacatcgtggttaatgaatatcatgtatatttgaacacct |
43432544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 91 - 128
Target Start/End: Original strand, 3758649 - 3758686
Alignment:
| Q |
91 |
aaatatttgtttaattacattcagtggatggttaatga |
128 |
Q |
| |
|
|||||| || |||||||||||||||||||||||||||| |
|
|
| T |
3758649 |
aaatatgtggttaattacattcagtggatggttaatga |
3758686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1343 times since January 2019
Visitors: 2391