View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0214_low_32 (Length: 466)
Name: NF0214_low_32
Description: NF0214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0214_low_32 |
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Alignment Details
Target: chr1 (Bit Score: 370; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 29 - 455
Target Start/End: Original strand, 6214768 - 6215216
Alignment:
| Q |
29 |
atagtgtacctgcaaggagaccattttgtgcgtttaacatgaagagccttttgaacttctgggagatttaaataggtagtggtataatcttcagcacaag |
128 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6214768 |
atagtgtacctgcaaggagaccattttgtgcgtttaacatgaagagccttttgaacttctgggagatttaaataggtagtggtataatcttcagcacaag |
6214867 |
T |
|
| Q |
129 |
ggtcgacattactgacctgcaaatttcatttaagaagaattttgtaattaatttcttatattcactattcagtaaactttattgtttatttttatccaac |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
6214868 |
ggtcgacattactgacctgcaaatttcatttaagaagaattttgtaattaatttcttatattcactattcagtaaactttattgtttaattttatccaac |
6214967 |
T |
|
| Q |
229 |
actttaaatttaatcagatagtctatccgttatttgttataggttcatcaacc----------------------atctaagcagactactctactcgag |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
6214968 |
actttaaatttaatcagatagtctatccgttatttgttataggttcatcaaccatcagctaacttatcagacagaatctaagcagactactctactcgag |
6215067 |
T |
|
| Q |
307 |
ctggttccgatttcgcatactataaatacaaaatagaatgcaacttacagagtaactagcaccatattttgttgcagatgaattacaaactggggcatat |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6215068 |
ctggttccgatttcgcatactataaatacaaaatagaatgcaacttacagagtaactagcaccatattttgttgcagatgaattacaaactggggcatat |
6215167 |
T |
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| Q |
407 |
atgttgtaaacgtcaatatttccaagctcatcatctgctctattttcat |
455 |
Q |
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| T |
6215168 |
atgttgtaaacgtcaatatttccaagctcatcatctgctatattttcat |
6215216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 32 - 179
Target Start/End: Original strand, 6207111 - 6207257
Alignment:
| Q |
32 |
gtgtacctgcaaggagaccattttgtgcgtttaacatgaagagccttttgaacttctgggagatttaaataggtagtggtataatcttcagcacaagggt |
131 |
Q |
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|||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |
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| T |
6207111 |
gtgtacctgcaatgagaccattttatgggtttaacatgaagagccttttgaacttctgggagatttaaataggcagcggtataatcttcagcacaagggt |
6207210 |
T |
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| Q |
132 |
cgacattactgacctgcaaatttcatttaagaagaattttgtaattaa |
179 |
Q |
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||| |||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
6207211 |
cgatattactgacctgcaaatttcatttaagaag-attttgtaattaa |
6207257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 285 - 441
Target Start/End: Original strand, 6207378 - 6207534
Alignment:
| Q |
285 |
taagcagactactctactcgagctggttccgatttcgcatactataaatacaaaatagaatgcaacttacagagtaactagcaccatattttgttgcaga |
384 |
Q |
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||||||||||| |||||||||||| |||||||||| |||||| ||| |||||||| |||||| |||||||| |||||||||| |||| |||||||||||| |
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| T |
6207378 |
taagcagactaatctactcgagctagttccgattttgcataccatatatacaaaaaagaatgtaacttacaaagtaactagctccattttttgttgcaga |
6207477 |
T |
|
| Q |
385 |
tgaattacaaactggggcatatatgttgtaaacgtcaatatttccaagctcatcatc |
441 |
Q |
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||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |
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|
| T |
6207478 |
tgaattacaaactggggcatatatgttgtaaacgtcaatatctacaagctcatcatc |
6207534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 30 - 187
Target Start/End: Original strand, 6177299 - 6177463
Alignment:
| Q |
30 |
tagtgtacctgcaaggagaccattttgtgcgtttaacatgaagagccttttgaacttctgggagatttaaataggtagtggtataatcttcagcacaagg |
129 |
Q |
| |
|
||||||||||||||| ||||||||||||| |||||||||||||||||| |||||||| || || |||||||| | | | ||||||||||||| |||||| |
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| T |
6177299 |
tagtgtacctgcaagaagaccattttgtgggtttaacatgaagagcctcttgaactttaggtaggtttaaataagcattagtataatcttcagaacaagg |
6177398 |
T |
|
| Q |
130 |
gtcgacattactgacctgcaa-------atttcatttaagaagaattttgtaattaatttcttat |
187 |
Q |
| |
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||| | || ||| ||||||| ||||||||||||||| |||||| |||||||||||||| |
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| T |
6177399 |
gtcaaaatcactaccctgcaatgttgatatttcatttaagaagcattttgcaattaatttcttat |
6177463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 373 - 448
Target Start/End: Original strand, 6177563 - 6177638
Alignment:
| Q |
373 |
ttttgttgcagatgaattacaaactggggcatatatgttgtaaacgtcaatatttccaagctcatcatctgctcta |
448 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| | |||||||| ||||||| |
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| T |
6177563 |
ttttgttgcagatgaattacaaaatggggcatatatgttgtaaatgtcaatatttcctaactcatcatttgctcta |
6177638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 237 - 284
Target Start/End: Original strand, 6207293 - 6207340
Alignment:
| Q |
237 |
tttaatcagatagtctatccgttatttgttataggttcatcaaccatc |
284 |
Q |
| |
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|||||||||||||||||||||||||||| ||||| |||||| |||||| |
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| T |
6207293 |
tttaatcagatagtctatccgttatttgctatagattcatctaccatc |
6207340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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