View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0214_low_33 (Length: 459)
Name: NF0214_low_33
Description: NF0214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0214_low_33 |
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Alignment Details
Target: chr7 (Bit Score: 132; Significance: 2e-68; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 108 - 377
Target Start/End: Original strand, 42310432 - 42310700
Alignment:
| Q |
108 |
gtgaacgtcattgatgtcaattaata-tataacaacttaccgtgtttaaagtctatattatactatacgaaagatttgagatattatccttatctaaatt |
206 |
Q |
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| T |
42310432 |
gtgaacatcattgatgtcaattaataatataacaacttgccgtatttaaagtcaatatcatactttacgaaagatttgagatattatccttatctaaatt |
42310531 |
T |
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| Q |
207 |
caacttgatgattcaatgtcttttttaattaaatgatatggat-gnnnnnnntgttaaatatattttataaaagagacnnnnnnnnnnnnnnnnnnnnnn |
305 |
Q |
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| T |
42310532 |
caacttgatgattcaatgtcttttttaattaaatgatatggatggaaaaaaatgttaaatatattttataaaagaaac---ttttaaaaaaaaaaaaatt |
42310628 |
T |
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| Q |
306 |
gaaaaaacaacttactttgaagacattttaaaaaagtcctaaaacaactcattttcaagagaagagaaacat |
377 |
Q |
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| T |
42310629 |
gaaaaaacaacttactttgaagacattttaaaaaagtcctagaacaactcattttcaagagaagagaaacat |
42310700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 363 - 451
Target Start/End: Original strand, 42310721 - 42310809
Alignment:
| Q |
363 |
agagaagagaaacataattaaaccaaagatcgcctaagatgttcaacactaacaacaacattggtaggctactcatataatttcatctc |
451 |
Q |
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| T |
42310721 |
agagaagaaaaacataattaaaccaaagatcgcctaagatgttcaacactaacaacaacattggtaggctactcatataatttcatctc |
42310809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 28 - 106
Target Start/End: Original strand, 42310147 - 42310225
Alignment:
| Q |
28 |
acatcaccaatgtcaatctataacaccttgacgcgtttgaagttgttatcatatttcacaaaagatttgagatattgtc |
106 |
Q |
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| T |
42310147 |
acatcaccaatgtcaatctataacaccttgacgcgtttgaagttgttatcatatttcacaaaagatttgagatattgtc |
42310225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 28 - 113
Target Start/End: Original strand, 42310063 - 42310148
Alignment:
| Q |
28 |
acatcaccaatgtcaatctataacaccttgacgcgtttgaagttgttatcatatttcacaaaagatttgagatattgtcggtgaac |
113 |
Q |
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| T |
42310063 |
acatcaccgatgccaatctataacacattatcgcgtttgaaattgtgatcatatttcacaaaagatttgggatattatcagtgaac |
42310148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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