View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0214_low_36 (Length: 454)
Name: NF0214_low_36
Description: NF0214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0214_low_36 |
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Alignment Details
Target: chr5 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 30 - 442
Target Start/End: Original strand, 13917891 - 13918304
Alignment:
| Q |
30 |
ttttctccacaccaaaacaacattcatagtttcttagcatatgtctcagagacctaacgttcctcactcttcttccatagcctgtggccttcattcccat |
129 |
Q |
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| T |
13917891 |
ttttctccacaccaaaacaacattcatagtttcttagcatatgtctcagagacctaacgttcctcactcttcttccatagcctgtggccttcattcccat |
13917990 |
T |
|
| Q |
130 |
ctcctggtttccagtgagatgagctctaactctaattggtctttttccaattcccagtagaactagtttctccactactatcaattaaattcattattac |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
13917991 |
ctcctggtttccagtgagatgagctctaactctaattggtctttttccaattcccagtagaactagtttctctactactatcaattaaattcattattac |
13918090 |
T |
|
| Q |
230 |
acccccaatattcatttttattctttgaaacttattgaaa-cctttttctatactaactcagaaacaacaacnnnnnnncaccatgggtgtcaaaggttt |
328 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
13918091 |
acccccaatattcatttttattctttgaaacttattgaaaccctttttctatactaactcagaaacaacaacaaaaaaacaccatgggtgtcaaaggttt |
13918190 |
T |
|
| Q |
329 |
tgttgaaggtggtattgcttcaatcatcgctggatgttccacacatccactagatcttattaaggttcgcatgcaacttcaaggtgaaaacgcgcctaag |
428 |
Q |
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||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13918191 |
tgttgaaggtggtattgcttcaatcatagcaggatgttccacacatccactagatcttattaaggttcgcatgcaacttcaaggtgaaaacgcgcctaag |
13918290 |
T |
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| Q |
429 |
ccgaacccggttca |
442 |
Q |
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| T |
13918291 |
ccgaacccagttca |
13918304 |
T |
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