View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0214_low_37 (Length: 452)
Name: NF0214_low_37
Description: NF0214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0214_low_37 |
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Alignment Details
Target: chr4 (Bit Score: 157; Significance: 3e-83; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 30 - 190
Target Start/End: Original strand, 23701163 - 23701323
Alignment:
| Q |
30 |
ctagatatcttccaacacaatcttcacagaaagagtgtgaacattttcggttttggaacatttcttcaacaggtttagcttccatacagatatcacaata |
129 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23701163 |
ctagatatcttccaacacaatattcacagaaagagtgtgaacattttcggttttggaacatttcttcaacaggtttagcttccatacagatatcacaata |
23701262 |
T |
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| Q |
130 |
ggattgtttcaactgagaagaagaataagacggcgacaaagaatattcacctacaaaagcc |
190 |
Q |
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| T |
23701263 |
ggattgtttcaactgagaagaagaataagacggcgacaaagaatattcacctacaaaagcc |
23701323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 254 - 446
Target Start/End: Original strand, 23701381 - 23701573
Alignment:
| Q |
254 |
acatctatagtagtatttgccccaagagtggaaaataataatgcttcttgtatttgtaattcttctgcatatgtctcatcacataattgaaaaatttctt |
353 |
Q |
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||||||||||||||||||| | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
23701381 |
acatctatagtagtatttgacataagagcggaaaataataatgcttcttgtatttgtaattcttctgcatatgtctcatcacataatcgaaaaatttctt |
23701480 |
T |
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| Q |
354 |
catcatgatcatgaaagactaagagggagatatcatctactaaattttgatgatcgtgtattgtagaggatgatgaattccccttcatctcac |
446 |
Q |
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| T |
23701481 |
catcatgatcatgtagggctaagagggagatatcatctactaaattttgatcatcatgtgttgtagaggatgatgaattccccttcatgtcac |
23701573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 30 - 153
Target Start/End: Complemental strand, 23694640 - 23694517
Alignment:
| Q |
30 |
ctagatatcttccaacacaatcttcacagaaagagtgtgaacattttcggttttggaacatttcttcaacaggtttagcttccatacagatatcacaata |
129 |
Q |
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||||||||||||||| |||||||||||||||||| |||||||||||| |||| ||||||||||||||||| ||||||||||||||||| ||| |||| || |
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| T |
23694640 |
ctagatatcttccaagacaatcttcacagaaagaatgtgaacatttttggttctggaacatttcttcaacgggtttagcttccatacaaatagcacagta |
23694541 |
T |
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| Q |
130 |
ggattgtttcaactgagaagaaga |
153 |
Q |
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|||||||||||||||||||||||| |
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| T |
23694540 |
ggattgtttcaactgagaagaaga |
23694517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 254 - 361
Target Start/End: Complemental strand, 23694434 - 23694327
Alignment:
| Q |
254 |
acatctatagtagtatttgccccaagagtggaaaataataatgcttcttgtatttgtaattcttctgcatatgtctcatcacataattgaaaaatttctt |
353 |
Q |
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||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| ||| | |||||||||||| |
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| T |
23694434 |
acatctatagtagtatttgacataagagtggaaaataataatgcttcttgtatttgtaattcctctgcatatgtctcttcagatattcgaaaaatttctt |
23694335 |
T |
|
| Q |
354 |
catcatga |
361 |
Q |
| |
|
||||||| |
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| T |
23694334 |
tatcatga |
23694327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 30 - 153
Target Start/End: Complemental strand, 23696771 - 23696647
Alignment:
| Q |
30 |
ctagatatcttccaacacaatcttcacagaaagagtgtgaacattttcggttttggaacatttcttcaacaggtttagcttccatacagatatcacaata |
129 |
Q |
| |
|
||||||| ||||||||||| |||||||||||||||||||||| ||| |||||| |||||||||| || |||||||||||||||| |||||| |||| || |
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| T |
23696771 |
ctagataacttccaacacatccttcacagaaagagtgtgaacagttttggttttcgaacatttctgcagcaggtttagcttccatgcagatagcacagta |
23696672 |
T |
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| Q |
130 |
gga-ttgtttcaactgagaagaaga |
153 |
Q |
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||| || |||||| ||||||||||| |
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| T |
23696671 |
ggatttttttcaattgagaagaaga |
23696647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 30 - 117
Target Start/End: Original strand, 8149301 - 8149388
Alignment:
| Q |
30 |
ctagatatcttccaacacaatcttcacagaaagagtgtgaacattttcggttttggaacatttcttcaacaggtttagcttccataca |
117 |
Q |
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||||| ||||| ||||||||||||||||||||||||| ||||| |||| ||| |||||||| ||||| ||||||| ||||||||| |
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| T |
8149301 |
ctagaaatcttgcaacacaatcttcacagaaagagtgcgaacagtttctacttttgaacattttttcaataggtttattttccataca |
8149388 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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