View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0214_low_38 (Length: 447)
Name: NF0214_low_38
Description: NF0214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0214_low_38 |
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Alignment Details
Target: chr1 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 30 - 441
Target Start/End: Original strand, 9028661 - 9029072
Alignment:
| Q |
30 |
agacttgccatatatagcaagtgtcggtagtcgaaatatgaatcttgatttgtcgcgatgcggtaatattgcctgttgaacatttattacatatgaatga |
129 |
Q |
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| T |
9028661 |
agacttgccatatatagcaagtgtcggtaatcgaaatatgaatcttgatttgtcgcgatgcggtagtattgcctgttgaacatttattacatatgagtga |
9028760 |
T |
|
| Q |
130 |
cacattatcatgacatcatacaaaattcttgatgttcaaaatgtaatatcaaatgccatttttcttgactaaatcaaatggcatgttgtgtataacttac |
229 |
Q |
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| T |
9028761 |
cacattatcatgacatcataaaaaattcttgatgttcaaaatgtaatatcaaatgccatttttcttgactaaatcaaatggcatgttgtgtataacttac |
9028860 |
T |
|
| Q |
230 |
cnnnnnnntatttgtcatgttggctatttgttctcttttaataatggactacaaaccctggattttcacacccacgtacgcctatatataggttatgatt |
329 |
Q |
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| T |
9028861 |
caaataaatatttgtcatgttgggtatttgttctcttttaataatggactataaaccctggattttcacacccacgtacgcctatatataagttatgatt |
9028960 |
T |
|
| Q |
330 |
gcacacaataagtttacagataaagctcttctaaaaagtttacaaaaacaggataaagttttattgctcgatattaatggcgaaaataataccctcatat |
429 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
9028961 |
gcacacaataagtttacagataaagctcttctaaaaagtttataaaaacttgataaagttttattgctcgatattaatggcgaaaataataccatcatat |
9029060 |
T |
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| Q |
430 |
gcttcatctcac |
441 |
Q |
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| T |
9029061 |
gctccatctcac |
9029072 |
T |
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